Definition Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome.
Accession NC_010981
Length 1,482,455

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The map label for this gene is sohB [C]

Identifier: 190570768

GI number: 190570768

Start: 348662

End: 349708

Strand: Direct

Name: sohB [C]

Synonym: WPa_0326

Alternate gene names: 190570768

Gene position: 348662-349708 (Clockwise)

Preceding gene: 190570767

Following gene: 190570769

Centisome position: 23.52

GC content: 34.38

Gene sequence:

>1047_bases
ATGTGGATAAATAAACCAGTAATGGTAGAGAGAAGAAGCTTTGAACTATTATCATTATATAATAGCAAACAACCTATCTT
TAAGAACTTAAAGCATTTTCATATAAACCCAAAAGGAATAGCAATAATACGTATTTATGGAGTTTTGACAAAAAAAACAG
AAGCTTTTGATCATATTTTAGATATGACTTCGTATGAAAATATTCATGAAGAGATAGAGAGTGCTTTAGAAGATAAAAGC
ATAGAGACGATTCTACTTGACATAGATAGTCCAGGTGGAGAAGTAAATGGAGTGTTTGATCTAGCTGATTTTATCTACGG
TGTAAGAGGAAAAAAGAGGATAATAGCGATAGCAAATGATGATGCGTACTCTGCTGCATATGCTATAGCTTCAAGCGCTG
AAAAGGTTTTTGTGTGTAGAACCTCTGGTGTTGGAAGTATAGGTGTTATTGCAAGTCACATTGACCAAAGCGGTTTTGAT
GAAAAGCAAGGAATAAAATACACAACTATTTTTGCAGGCAAGAGAAAGAATGATTTAAATCCACATGAGCCAATGACGTC
TGAAAGTCTGGAAAGCTTACAAAAAGAAGTAGACCGACTATATGAAATGTTTGTGCAGCTAATAGCAAGAAACAGAGGTC
TTTCAATTGAAAAGATTCGATCAACAGAAGCAGGTCTATATTTTGGCGAGAAAGCAGTAGAAATAGGTCTTGCAGATGGA
GTTACAACATTTTTTGAATTTATTAACAAAGGAGAAAATACTATGAATAAACAAACTACAACTGACCTAGAAATTGATGA
CCTAGAAACTGATAATTTAACTAAGTATCGTACTGAAATTGTTGAATTAATACGTTTATGTAACTTATCACGAATGCCAG
AGAAAATAGGAGAATTTATTGAGCAGGGTGTAAGTATTGAGCAAGCGAGGGAAGTTTTAATGGAATTACTTGCAGAGAGA
ACGAAAAAGACAGAGATACTGAGTGCAATACCACAGAATTCGCAGGAAGATTTGATGACACAGGTAGCGAAAAGTCGGTG
CATTTAA

Upstream 100 bases:

>100_bases
TTGAAGAAATTGATCAAGAGATTGCCGAAGATCAAAAGCGAGCTGATTCTTTTGGACTTTGTTTCGATTCTGACATTAAT
CATAAAAGGGAAGGAAGGTG

Downstream 100 bases:

>100_bases
ATTTTATAACCGCCATATATAGTGCTCTGCGGTAAATAAGTGTCCAAAATGTGCCATAATGGCTAATTATAAGGTAATAA
CTGCGGTGTATAGCATTTAT

Product: Putative minor capsid protein c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MWINKPVMVERRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHEEIESALEDKS
IETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIANDDAYSAAYAIASSAEKVFVCRTSGVGSIGVIASHIDQSGFD
EKQGIKYTTIFAGKRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADG
VTTFFEFINKGENTMNKQTTTDLEIDDLETDNLTKYRTEIVELIRLCNLSRMPEKIGEFIEQGVSIEQAREVLMELLAER
TKKTEILSAIPQNSQEDLMTQVAKSRCI

Sequences:

>Translated_348_residues
MWINKPVMVERRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHEEIESALEDKS
IETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIANDDAYSAAYAIASSAEKVFVCRTSGVGSIGVIASHIDQSGFD
EKQGIKYTTIFAGKRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADG
VTTFFEFINKGENTMNKQTTTDLEIDDLETDNLTKYRTEIVELIRLCNLSRMPEKIGEFIEQGVSIEQAREVLMELLAER
TKKTEILSAIPQNSQEDLMTQVAKSRCI
>Mature_348_residues
MWINKPVMVERRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHEEIESALEDKS
IETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIANDDAYSAAYAIASSAEKVFVCRTSGVGSIGVIASHIDQSGFD
EKQGIKYTTIFAGKRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADG
VTTFFEFINKGENTMNKQTTTDLEIDDLETDNLTKYRTEIVELIRLCNLSRMPEKIGEFIEQGVSIEQAREVLMELLAER
TKKTEILSAIPQNSQEDLMTQVAKSRCI

Specific function: Multicopy Suppressor Of The Htra (Degp) Null Phenotype. It Is Possibly A Protease, Not Essential For Bacterial VIability. [C]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=196, Percent_Identity=29.5918367346939, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004635
- InterPro:   IPR002142 [H]

Pfam domain/function: PF01343 Peptidase_S49 [H]

EC number: 3.4.21.-

Molecular weight: Translated: 39291; Mature: 39291

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWINKPVMVERRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHIL
CCCCCCCEEEHHHHHHHHHHCCCCHHHHCCHHEECCCCCEEEEEEEHHHHHHHHHHHHHH
DMTSYENIHEEIESALEDKSIETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIAND
HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECC
DAYSAAYAIASSAEKVFVCRTSGVGSIGVIASHIDQSGFDEKQGIKYTTIFAGKRKNDLN
CHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCEEEEEEECCCCCCCC
PHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEECCHHHEEECCCC
VTTFFEFINKGENTMNKQTTTDLEIDDLETDNLTKYRTEIVELIRLCNLSRMPEKIGEFI
HHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
EQGVSIEQAREVLMELLAERTKKTEILSAIPQNSQEDLMTQVAKSRCI
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MWINKPVMVERRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHIL
CCCCCCCEEEHHHHHHHHHHCCCCHHHHCCHHEECCCCCEEEEEEEHHHHHHHHHHHHHH
DMTSYENIHEEIESALEDKSIETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIAND
HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECC
DAYSAAYAIASSAEKVFVCRTSGVGSIGVIASHIDQSGFDEKQGIKYTTIFAGKRKNDLN
CHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCEEEEEEECCCCCCCC
PHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEECCHHHEEECCCC
VTTFFEFINKGENTMNKQTTTDLEIDDLETDNLTKYRTEIVELIRLCNLSRMPEKIGEFI
HHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
EQGVSIEQAREVLMELLAERTKKTEILSAIPQNSQEDLMTQVAKSRCI
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]