Definition | Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome. |
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Accession | NC_010981 |
Length | 1,482,455 |
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The map label for this gene is sohB [C]
Identifier: 190570768
GI number: 190570768
Start: 348662
End: 349708
Strand: Direct
Name: sohB [C]
Synonym: WPa_0326
Alternate gene names: 190570768
Gene position: 348662-349708 (Clockwise)
Preceding gene: 190570767
Following gene: 190570769
Centisome position: 23.52
GC content: 34.38
Gene sequence:
>1047_bases ATGTGGATAAATAAACCAGTAATGGTAGAGAGAAGAAGCTTTGAACTATTATCATTATATAATAGCAAACAACCTATCTT TAAGAACTTAAAGCATTTTCATATAAACCCAAAAGGAATAGCAATAATACGTATTTATGGAGTTTTGACAAAAAAAACAG AAGCTTTTGATCATATTTTAGATATGACTTCGTATGAAAATATTCATGAAGAGATAGAGAGTGCTTTAGAAGATAAAAGC ATAGAGACGATTCTACTTGACATAGATAGTCCAGGTGGAGAAGTAAATGGAGTGTTTGATCTAGCTGATTTTATCTACGG TGTAAGAGGAAAAAAGAGGATAATAGCGATAGCAAATGATGATGCGTACTCTGCTGCATATGCTATAGCTTCAAGCGCTG AAAAGGTTTTTGTGTGTAGAACCTCTGGTGTTGGAAGTATAGGTGTTATTGCAAGTCACATTGACCAAAGCGGTTTTGAT GAAAAGCAAGGAATAAAATACACAACTATTTTTGCAGGCAAGAGAAAGAATGATTTAAATCCACATGAGCCAATGACGTC TGAAAGTCTGGAAAGCTTACAAAAAGAAGTAGACCGACTATATGAAATGTTTGTGCAGCTAATAGCAAGAAACAGAGGTC TTTCAATTGAAAAGATTCGATCAACAGAAGCAGGTCTATATTTTGGCGAGAAAGCAGTAGAAATAGGTCTTGCAGATGGA GTTACAACATTTTTTGAATTTATTAACAAAGGAGAAAATACTATGAATAAACAAACTACAACTGACCTAGAAATTGATGA CCTAGAAACTGATAATTTAACTAAGTATCGTACTGAAATTGTTGAATTAATACGTTTATGTAACTTATCACGAATGCCAG AGAAAATAGGAGAATTTATTGAGCAGGGTGTAAGTATTGAGCAAGCGAGGGAAGTTTTAATGGAATTACTTGCAGAGAGA ACGAAAAAGACAGAGATACTGAGTGCAATACCACAGAATTCGCAGGAAGATTTGATGACACAGGTAGCGAAAAGTCGGTG CATTTAA
Upstream 100 bases:
>100_bases TTGAAGAAATTGATCAAGAGATTGCCGAAGATCAAAAGCGAGCTGATTCTTTTGGACTTTGTTTCGATTCTGACATTAAT CATAAAAGGGAAGGAAGGTG
Downstream 100 bases:
>100_bases ATTTTATAACCGCCATATATAGTGCTCTGCGGTAAATAAGTGTCCAAAATGTGCCATAATGGCTAATTATAAGGTAATAA CTGCGGTGTATAGCATTTAT
Product: Putative minor capsid protein c
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MWINKPVMVERRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHEEIESALEDKS IETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIANDDAYSAAYAIASSAEKVFVCRTSGVGSIGVIASHIDQSGFD EKQGIKYTTIFAGKRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADG VTTFFEFINKGENTMNKQTTTDLEIDDLETDNLTKYRTEIVELIRLCNLSRMPEKIGEFIEQGVSIEQAREVLMELLAER TKKTEILSAIPQNSQEDLMTQVAKSRCI
Sequences:
>Translated_348_residues MWINKPVMVERRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHEEIESALEDKS IETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIANDDAYSAAYAIASSAEKVFVCRTSGVGSIGVIASHIDQSGFD EKQGIKYTTIFAGKRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADG VTTFFEFINKGENTMNKQTTTDLEIDDLETDNLTKYRTEIVELIRLCNLSRMPEKIGEFIEQGVSIEQAREVLMELLAER TKKTEILSAIPQNSQEDLMTQVAKSRCI >Mature_348_residues MWINKPVMVERRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHILDMTSYENIHEEIESALEDKS IETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIANDDAYSAAYAIASSAEKVFVCRTSGVGSIGVIASHIDQSGFD EKQGIKYTTIFAGKRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADG VTTFFEFINKGENTMNKQTTTDLEIDDLETDNLTKYRTEIVELIRLCNLSRMPEKIGEFIEQGVSIEQAREVLMELLAER TKKTEILSAIPQNSQEDLMTQVAKSRCI
Specific function: Multicopy Suppressor Of The Htra (Degp) Null Phenotype. It Is Possibly A Protease, Not Essential For Bacterial VIability. [C]
COG id: COG0616
COG function: function code OU; Periplasmic serine proteases (ClpP class)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S49 family [H]
Homologues:
Organism=Escherichia coli, GI1787527, Length=196, Percent_Identity=29.5918367346939, Blast_Score=71, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004635 - InterPro: IPR002142 [H]
Pfam domain/function: PF01343 Peptidase_S49 [H]
EC number: 3.4.21.-
Molecular weight: Translated: 39291; Mature: 39291
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWINKPVMVERRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHIL CCCCCCCEEEHHHHHHHHHHCCCCHHHHCCHHEECCCCCEEEEEEEHHHHHHHHHHHHHH DMTSYENIHEEIESALEDKSIETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIAND HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECC DAYSAAYAIASSAEKVFVCRTSGVGSIGVIASHIDQSGFDEKQGIKYTTIFAGKRKNDLN CHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCEEEEEEECCCCCCCC PHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEECCHHHEEECCCC VTTFFEFINKGENTMNKQTTTDLEIDDLETDNLTKYRTEIVELIRLCNLSRMPEKIGEFI HHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH EQGVSIEQAREVLMELLAERTKKTEILSAIPQNSQEDLMTQVAKSRCI HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MWINKPVMVERRSFELLSLYNSKQPIFKNLKHFHINPKGIAIIRIYGVLTKKTEAFDHIL CCCCCCCEEEHHHHHHHHHHCCCCHHHHCCHHEECCCCCEEEEEEEHHHHHHHHHHHHHH DMTSYENIHEEIESALEDKSIETILLDIDSPGGEVNGVFDLADFIYGVRGKKRIIAIAND HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECC DAYSAAYAIASSAEKVFVCRTSGVGSIGVIASHIDQSGFDEKQGIKYTTIFAGKRKNDLN CHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCEEEEEEECCCCCCCC PHEPMTSESLESLQKEVDRLYEMFVQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEECCHHHEEECCCC VTTFFEFINKGENTMNKQTTTDLEIDDLETDNLTKYRTEIVELIRLCNLSRMPEKIGEFI HHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH EQGVSIEQAREVLMELLAERTKKTEILSAIPQNSQEDLMTQVAKSRCI HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]