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The map label for this gene is 190570673

Identifier: 190570673

GI number: 190570673

Start: 233185

End: 234819

Strand: Direct

Name: 190570673

Synonym: WPa_0223

Alternate gene names: NA

Gene position: 233185-234819 (Clockwise)

Preceding gene: 190570672

Following gene: 190570674

Centisome position: 15.73

GC content: 37.31

Gene sequence:

>1635_bases
ATGAACATAAACAAAAATGAGTTTTTATTTCTTCCTCTTGGAGGAGTAGGAAGAATTGGGATGAACGTTAGCCTATATCA
TTATCAAGGCAAGTGGATTATGATCGACCTTGGTATCGGTTTTGCAGATGAAACTATGCCAGGTGTTGAGCTACTCATTG
CTGATGTAGATTTTATTGCTCAAAGAAAAAAAGATTTGCTTGGAATAATAATTACACATGCACATGAAGATCACTGTGGT
GCAGTGCCTCATCTGTGGGAAGATTTGCAATGTCCCATATATACAACAAAGTTTACAGTTAATTTTCTCAAGGAGAAACT
AAAGGAGTTTCGATTGGAAGGTGTGGTACCTGTGAAAGAGGTAGACATAAATGGCAGCATAAATTTGGGTCCTTTTACCG
TTGAGTTTATAAATGTAACTCACTCAATTCCTGAGGCAAATTCAATATTAATTAGCACTGAAGCAGGTAGTGCACTTCAT
ACTGGGGACTGGAAATTTGATCCAAAACCTGTTGTTGGATTAATTTCTAATATAGAGCGTTTAAAAGAAATTGGCGATAA
AGGTGATCTACTTGCAGCAATTTGTGATTCAACAAACATACTGAGCAAACACGACCCTGAATCAGAAAGTGAAATTTATG
ATAATATTTACAATATAATAAAGCGGTCTAAAAAATTGGTTGCTGTCTCGCTATTTGCCTCGAATGTGGCGCGAATTGAA
ACAATAAGCCAAGCTGCAAAAGCACTAAATAGAAAAGTGGTTTTACTTGGCAGATCTTTATGGAGAATAGTGAAAGTTGC
TCAGGATAGTGGTTATTTAACTGATTCTCCTGAGTTTCTAGAAGCAAAGGAGGCAGTAAATTTTCCAAGGGAAAAGCTGG
TGCTACTTTGCACAGGTTGTCAAGGTGAGCCACTGGCAGCTACCGCAAGACTTGCCTCTAAGAGTCATCAAGCATTTAAA
ATGCAGCAAGGTGATACCATGATCTTTTCATCAAAAATCATTCCTGGCAATGAAACTCGTGCACATAACACGCTCAATGC
CTTTATTGAGATGGGAGTGGAAGTTATTACTGAAAAAACAGAGAATGTTCATGCTTCCGGGCATCCAGTAAAAGCAGAGC
TAAGGGAAATGTATTCTTTGATAAAACCTAAGATGTCTATTCCGGTTCATGGTGAGTATATTCATACGGATGCACATGTA
AAGTTTGCTAAAGAGTGCGGTGTGAAAAAAGCAATAATGATTGCACCAGGTGATATTGTTAATTTGGAAAATGGGGAAAA
AGTTAGCTCCATTGATGTCGACTACTTTGGTATTGATGGTATGTTACTCCGTCATCCAGAATGCAGCGTTATAAAAATGC
GTGAGAGAATGAGAGATGCCGGAGCTATCGTAGTGACAGCAGTTGTAAACAAGAAAAATAAACTGCTTGCTAAGCCAAAA
GTATTTGCACCTGGTGTTTTCGAAGCGCAAAAAGATGCAGCCATTATGCAAAAGATCATAAAGAAGGTTGAGTCAGCATT
TGACTCACAGCCGATAAAAAAAATAAGAAATAAGATTGAAAGTTCAATATTTAGTATCTTAAAGGAATATTTACTAAAAA
GACCTATAATTGAAGTCCAAATAGAACAGGTATAG

Upstream 100 bases:

>100_bases
TCTTTTAGTGAAAAGATTTTTTTAAGTTATGCAAAAGTGATAAATTCCTTTATTTAAGGTCGAAGTTTTGCTATCCTCGC
ATTTTAATAATTTAAAATTA

Downstream 100 bases:

>100_bases
AAGTATACCTCTTTTTATTAACCATTATTTGAGTAAGAAGTTAACAATGTATTCTTTGATGTTATTTCAGCATGCAATAC
TGGAATCCGTAAAAAAAAAT

Product: metallo-beta-lactamase family protein

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGIGFADETMPGVELLIADVDFIAQRKKDLLGIIITHAHEDHCG
AVPHLWEDLQCPIYTTKFTVNFLKEKLKEFRLEGVVPVKEVDINGSINLGPFTVEFINVTHSIPEANSILISTEAGSALH
TGDWKFDPKPVVGLISNIERLKEIGDKGDLLAAICDSTNILSKHDPESESEIYDNIYNIIKRSKKLVAVSLFASNVARIE
TISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPEFLEAKEAVNFPREKLVLLCTGCQGEPLAATARLASKSHQAFK
MQQGDTMIFSSKIIPGNETRAHNTLNAFIEMGVEVITEKTENVHASGHPVKAELREMYSLIKPKMSIPVHGEYIHTDAHV
KFAKECGVKKAIMIAPGDIVNLENGEKVSSIDVDYFGIDGMLLRHPECSVIKMRERMRDAGAIVVTAVVNKKNKLLAKPK
VFAPGVFEAQKDAAIMQKIIKKVESAFDSQPIKKIRNKIESSIFSILKEYLLKRPIIEVQIEQV

Sequences:

>Translated_544_residues
MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGIGFADETMPGVELLIADVDFIAQRKKDLLGIIITHAHEDHCG
AVPHLWEDLQCPIYTTKFTVNFLKEKLKEFRLEGVVPVKEVDINGSINLGPFTVEFINVTHSIPEANSILISTEAGSALH
TGDWKFDPKPVVGLISNIERLKEIGDKGDLLAAICDSTNILSKHDPESESEIYDNIYNIIKRSKKLVAVSLFASNVARIE
TISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPEFLEAKEAVNFPREKLVLLCTGCQGEPLAATARLASKSHQAFK
MQQGDTMIFSSKIIPGNETRAHNTLNAFIEMGVEVITEKTENVHASGHPVKAELREMYSLIKPKMSIPVHGEYIHTDAHV
KFAKECGVKKAIMIAPGDIVNLENGEKVSSIDVDYFGIDGMLLRHPECSVIKMRERMRDAGAIVVTAVVNKKNKLLAKPK
VFAPGVFEAQKDAAIMQKIIKKVESAFDSQPIKKIRNKIESSIFSILKEYLLKRPIIEVQIEQV
>Mature_544_residues
MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGIGFADETMPGVELLIADVDFIAQRKKDLLGIIITHAHEDHCG
AVPHLWEDLQCPIYTTKFTVNFLKEKLKEFRLEGVVPVKEVDINGSINLGPFTVEFINVTHSIPEANSILISTEAGSALH
TGDWKFDPKPVVGLISNIERLKEIGDKGDLLAAICDSTNILSKHDPESESEIYDNIYNIIKRSKKLVAVSLFASNVARIE
TISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPEFLEAKEAVNFPREKLVLLCTGCQGEPLAATARLASKSHQAFK
MQQGDTMIFSSKIIPGNETRAHNTLNAFIEMGVEVITEKTENVHASGHPVKAELREMYSLIKPKMSIPVHGEYIHTDAHV
KFAKECGVKKAIMIAPGDIVNLENGEKVSSIDVDYFGIDGMLLRHPECSVIKMRERMRDAGAIVVTAVVNKKNKLLAKPK
VFAPGVFEAQKDAAIMQKIIKKVESAFDSQPIKKIRNKIESSIFSILKEYLLKRPIIEVQIEQV

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 60472; Mature: 60472

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGIGFADETMPGVELLIADVDFIA
CCCCCCCEEEEECCCCCEECCEEEEEEEECEEEEEEECCCCCCCCCCCCEEEEHHHHHHH
QRKKDLLGIIITHAHEDHCGAVPHLWEDLQCPIYTTKFTVNFLKEKLKEFRLEGVVPVKE
HHHHHHEEEEEEECCCCCCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEE
VDINGSINLGPFTVEFINVTHSIPEANSILISTEAGSALHTGDWKFDPKPVVGLISNIER
ECCCCCEECCCEEEEEEEEECCCCCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHH
LKEIGDKGDLLAAICDSTNILSKHDPESESEIYDNIYNIIKRSKKLVAVSLFASNVARIE
HHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH
TISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPEFLEAKEAVNFPREKLVLLCTGC
HHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECC
QGEPLAATARLASKSHQAFKMQQGDTMIFSSKIIPGNETRAHNTLNAFIEMGVEVITEKT
CCCCCHHHHHHHHCCCHHEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
ENVHASGHPVKAELREMYSLIKPKMSIPVHGEYIHTDAHVKFAKECGVKKAIMIAPGDIV
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCEEEEECCCCEE
NLENGEKVSSIDVDYFGIDGMLLRHPECSVIKMRERMRDAGAIVVTAVVNKKNKLLAKPK
ECCCCCEEEEEECEEECCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEECCC
VFAPGVFEAQKDAAIMQKIIKKVESAFDSQPIKKIRNKIESSIFSILKEYLLKRPIIEVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
IEQV
EECC
>Mature Secondary Structure
MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGIGFADETMPGVELLIADVDFIA
CCCCCCCEEEEECCCCCEECCEEEEEEEECEEEEEEECCCCCCCCCCCCEEEEHHHHHHH
QRKKDLLGIIITHAHEDHCGAVPHLWEDLQCPIYTTKFTVNFLKEKLKEFRLEGVVPVKE
HHHHHHEEEEEEECCCCCCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEE
VDINGSINLGPFTVEFINVTHSIPEANSILISTEAGSALHTGDWKFDPKPVVGLISNIER
ECCCCCEECCCEEEEEEEEECCCCCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHH
LKEIGDKGDLLAAICDSTNILSKHDPESESEIYDNIYNIIKRSKKLVAVSLFASNVARIE
HHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH
TISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPEFLEAKEAVNFPREKLVLLCTGC
HHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECC
QGEPLAATARLASKSHQAFKMQQGDTMIFSSKIIPGNETRAHNTLNAFIEMGVEVITEKT
CCCCCHHHHHHHHCCCHHEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
ENVHASGHPVKAELREMYSLIKPKMSIPVHGEYIHTDAHVKFAKECGVKKAIMIAPGDIV
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCEEEEECCCCEE
NLENGEKVSSIDVDYFGIDGMLLRHPECSVIKMRERMRDAGAIVVTAVVNKKNKLLAKPK
ECCCCCEEEEEECEEECCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEECCC
VFAPGVFEAQKDAAIMQKIIKKVESAFDSQPIKKIRNKIESSIFSILKEYLLKRPIIEVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
IEQV
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA