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The map label for this gene is ykfC [H]

Identifier: 190570627

GI number: 190570627

Start: 177195

End: 178439

Strand: Reverse

Name: ykfC [H]

Synonym: WPa_0169

Alternate gene names: 190570627

Gene position: 178439-177195 (Counterclockwise)

Preceding gene: 190570628

Following gene: 190570626

Centisome position: 12.04

GC content: 37.67

Gene sequence:

>1245_bases
ATGAATAAAACAAAGTCTTTTGATATACCGAAGCAACTTATTTGGAGAGCTTATAAACAAGTATCGAAAAATAAAGGTGC
AGCAGGTGTAGATGAGGTCTCGATAACAAAGTTTGAAGAAAATCTAAAGGATAATCTATACAAATTATGGAATCGGATGT
CATCCGGAAGTTATTTTCCAGAGCCGGTAAAAGCTGTTGCGATACCAAAAGATACAGGAGGGCAAAGAATTTTATGTGTG
CCTTCAGTATTCGACAGAATAGCGCAAACAGCAGCTACAATGTATCTTGAGCCGTTAGTAGAACCGAAATTTCACGAAGA
TTCATATGGTTATAGACCAAATAAGTCTGCGCTGGATGCGGTATACACAGCACGGAAGAGATGTTGGAAAAATGATTGGA
CGGTAGATCTTGATATATCTGGATTTTTCGACAATCTGGACCACGATTTAGCACTGCAGGCTATCAAGAAACACACAGAC
TGCAAATGGGTCATACTGTATGTTGAGAGGTGGATGAAAGCCCCCATTCAGCAAGCAGATGGCAGTAGGGTAACAAGGGA
TAAAGGAGTTCCGCAAGGAGGTTCAATAAGCCCAATCATTTCAAGCATATTTATGCACCATGCGTTTGATATGTGGATGA
AACAAAATTATCCAACAGTACCATTTGAAAGATATGTAGATGATGCGATAGTGCACTGCAGAACTAAAAGACAGGCAGGA
TTTATGAAAGTAATGATTGAAGAAAGATTGGCTAAGTGTAAATTGAAGTTACATCCTGAAAAGACACAGATTGTGTACAG
TAAGGATGATGATAGAAAAGAACAATTTCCTAAACAAAGCTTTGATTTTCTAGGTTATACTTTTAGACCTAGAGTAGCAA
AGAATAAGATGAGGAATTATTTCATCTCATTTCTACCTGCAATTAGTAACAAAGCCAAGAAGAAGATCAAGAAAACCATA
AAGTCATGGAGAATACATCGGATTACATGGACCACACTAGAGGAAATATCGAAGAAGATAGATCCAATAGTCAGAGGCTG
GTTTCAGTACTATGGCAGGTTTTATAAATCAGAGATGTATCCATCTCTTAGAAATATAGAGAGATACCTCATAAGATGGG
TCAGGACAAAATATAAGAAACTTCGTGATCACGGAAGACTAGCAAAGCAATTTCTAGGAAAAGTGAGAAAGAGGTCTCCA
AGTATTTTCTATCATTGGACACTTGGGTTAGGATCAAAAGGCTAA

Upstream 100 bases:

>100_bases
GGATTAGCTCGTAGTAGCGAAGAAGTTTCTGTAATGGAAATGGAGTGAAGGGGCTAAGTTATTTAGTTTTAATTATTTAT
CAACCGAAAGGGAGGAGTTA

Downstream 100 bases:

>100_bases
ATAATGGGAGCTGTATAAGCCGAGAGGTTTCCGTGCAGTTCTGCGAGAGACTGGTGGGGAAGCTCCGCCGGTCTACTCTC
CTTGTTGCATCACTCAAGTA

Product: Putative reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MNKTKSFDIPKQLIWRAYKQVSKNKGAAGVDEVSITKFEENLKDNLYKLWNRMSSGSYFPEPVKAVAIPKDTGGQRILCV
PSVFDRIAQTAATMYLEPLVEPKFHEDSYGYRPNKSALDAVYTARKRCWKNDWTVDLDISGFFDNLDHDLALQAIKKHTD
CKWVILYVERWMKAPIQQADGSRVTRDKGVPQGGSISPIISSIFMHHAFDMWMKQNYPTVPFERYVDDAIVHCRTKRQAG
FMKVMIEERLAKCKLKLHPEKTQIVYSKDDDRKEQFPKQSFDFLGYTFRPRVAKNKMRNYFISFLPAISNKAKKKIKKTI
KSWRIHRITWTTLEEISKKIDPIVRGWFQYYGRFYKSEMYPSLRNIERYLIRWVRTKYKKLRDHGRLAKQFLGKVRKRSP
SIFYHWTLGLGSKG

Sequences:

>Translated_414_residues
MNKTKSFDIPKQLIWRAYKQVSKNKGAAGVDEVSITKFEENLKDNLYKLWNRMSSGSYFPEPVKAVAIPKDTGGQRILCV
PSVFDRIAQTAATMYLEPLVEPKFHEDSYGYRPNKSALDAVYTARKRCWKNDWTVDLDISGFFDNLDHDLALQAIKKHTD
CKWVILYVERWMKAPIQQADGSRVTRDKGVPQGGSISPIISSIFMHHAFDMWMKQNYPTVPFERYVDDAIVHCRTKRQAG
FMKVMIEERLAKCKLKLHPEKTQIVYSKDDDRKEQFPKQSFDFLGYTFRPRVAKNKMRNYFISFLPAISNKAKKKIKKTI
KSWRIHRITWTTLEEISKKIDPIVRGWFQYYGRFYKSEMYPSLRNIERYLIRWVRTKYKKLRDHGRLAKQFLGKVRKRSP
SIFYHWTLGLGSKG
>Mature_414_residues
MNKTKSFDIPKQLIWRAYKQVSKNKGAAGVDEVSITKFEENLKDNLYKLWNRMSSGSYFPEPVKAVAIPKDTGGQRILCV
PSVFDRIAQTAATMYLEPLVEPKFHEDSYGYRPNKSALDAVYTARKRCWKNDWTVDLDISGFFDNLDHDLALQAIKKHTD
CKWVILYVERWMKAPIQQADGSRVTRDKGVPQGGSISPIISSIFMHHAFDMWMKQNYPTVPFERYVDDAIVHCRTKRQAG
FMKVMIEERLAKCKLKLHPEKTQIVYSKDDDRKEQFPKQSFDFLGYTFRPRVAKNKMRNYFISFLPAISNKAKKKIKKTI
KSWRIHRITWTTLEEISKKIDPIVRGWFQYYGRFYKSEMYPSLRNIERYLIRWVRTKYKKLRDHGRLAKQFLGKVRKRSP
SIFYHWTLGLGSKG

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=242, Percent_Identity=25.6198347107438, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6226521, Length=194, Percent_Identity=26.2886597938144, Blast_Score=86, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 48788; Mature: 48788

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTKSFDIPKQLIWRAYKQVSKNKGAAGVDEVSITKFEENLKDNLYKLWNRMSSGSYFP
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EPVKAVAIPKDTGGQRILCVPSVFDRIAQTAATMYLEPLVEPKFHEDSYGYRPNKSALDA
CCCCEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
VYTARKRCWKNDWTVDLDISGFFDNLDHDLALQAIKKHTDCKWVILYVERWMKAPIQQAD
HHHHHHHHCCCCCEEEEEECHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHCC
GSRVTRDKGVPQGGSISPIISSIFMHHAFDMWMKQNYPTVPFERYVDDAIVHCRTKRQAG
CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
FMKVMIEERLAKCKLKLHPEKTQIVYSKDDDRKEQFPKQSFDFLGYTFRPRVAKNKMRNY
HHHHHHHHHHHHHHEEECCCCEEEEECCCCCHHHHCCHHHHHHCCCCCCCHHHHHHHHHH
FISFLPAISNKAKKKIKKTIKSWRIHRITWTTLEEISKKIDPIVRGWFQYYGRFYKSEMY
HHHHHHHHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PSLRNIERYLIRWVRTKYKKLRDHGRLAKQFLGKVRKRSPSIFYHWTLGLGSKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MNKTKSFDIPKQLIWRAYKQVSKNKGAAGVDEVSITKFEENLKDNLYKLWNRMSSGSYFP
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EPVKAVAIPKDTGGQRILCVPSVFDRIAQTAATMYLEPLVEPKFHEDSYGYRPNKSALDA
CCCCEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
VYTARKRCWKNDWTVDLDISGFFDNLDHDLALQAIKKHTDCKWVILYVERWMKAPIQQAD
HHHHHHHHCCCCCEEEEEECHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHCC
GSRVTRDKGVPQGGSISPIISSIFMHHAFDMWMKQNYPTVPFERYVDDAIVHCRTKRQAG
CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
FMKVMIEERLAKCKLKLHPEKTQIVYSKDDDRKEQFPKQSFDFLGYTFRPRVAKNKMRNY
HHHHHHHHHHHHHHEEECCCCEEEEECCCCCHHHHCCHHHHHHCCCCCCCHHHHHHHHHH
FISFLPAISNKAKKKIKKTIKSWRIHRITWTTLEEISKKIDPIVRGWFQYYGRFYKSEMY
HHHHHHHHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PSLRNIERYLIRWVRTKYKKLRDHGRLAKQFLGKVRKRSPSIFYHWTLGLGSKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]