Click here to switch to the map view.

The map label for this gene is 189499057

Identifier: 189499057

GI number: 189499057

Start: 57715

End: 58161

Strand: Reverse

Name: 189499057

Synonym: Cphamn1_0058

Alternate gene names: NA

Gene position: 58161-57715 (Counterclockwise)

Preceding gene: 189499058

Following gene: 189499056

Centisome position: 2.13

GC content: 48.32

Gene sequence:

>447_bases
ATGCCGCTTTACATGCTTGACACAAACATTGCCGGTCATGTCATCAAGGGAGACATACCTGCGATTCGTGAAAAGCTGGC
ATCCGTCCCGATGCAACATGTCCTCATCTCATCAGTCACTCAGGCTGAATTGCTTTACGGGCTGGCGAAACGCTCCTATC
CCAAAGGATTGTCCGCGCGAGTACACGAGTTTCTCATTCGTGTCGACATCCTTCCCTGGAACCATGAAGTTGTAACGGTT
TACGGCGATCTCAGAGCAAGATGCGAGGCCTCAGGCATATCACTATCCCCCCTCGACATGATGATCGCCTCTCACGCAAA
AGCCGCTGACGCTGTTCTCGTCACAAGAGACAGAGCATTCAGTCGAGTTCCTGATGGATTGAGGATTGAAACTGGTAAGG
AAATTGAGGCTATTATGTATGTACACTTTTTTCACTATTTTGAATAA

Upstream 100 bases:

>100_bases
ACACGCTTGACGAAACAACTGAGGTTCCGCCCGAATTCATGAGCAAGGATGATCGAAAAGAGACATCTCACACTCGTGAT
CCGTTCGAGGAATGGGAAGA

Downstream 100 bases:

>100_bases
ATGAATCTATAGATGATACCGCAATGAACGAATGGTCGAAAAGAATAACGGTGAACGCTGAACAATGCGGAGGTCGCCCG
TGCATAAGAGGGTTAAGAAT

Product: PilT protein domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MPLYMLDTNIAGHVIKGDIPAIREKLASVPMQHVLISSVTQAELLYGLAKRSYPKGLSARVHEFLIRVDILPWNHEVVTV
YGDLRARCEASGISLSPLDMMIASHAKAADAVLVTRDRAFSRVPDGLRIETGKEIEAIMYVHFFHYFE

Sequences:

>Translated_148_residues
MPLYMLDTNIAGHVIKGDIPAIREKLASVPMQHVLISSVTQAELLYGLAKRSYPKGLSARVHEFLIRVDILPWNHEVVTV
YGDLRARCEASGISLSPLDMMIASHAKAADAVLVTRDRAFSRVPDGLRIETGKEIEAIMYVHFFHYFE
>Mature_147_residues
PLYMLDTNIAGHVIKGDIPAIREKLASVPMQHVLISSVTQAELLYGLAKRSYPKGLSARVHEFLIRVDILPWNHEVVTVY
GDLRARCEASGISLSPLDMMIASHAKAADAVLVTRDRAFSRVPDGLRIETGKEIEAIMYVHFFHYFE

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 16591; Mature: 16459

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLYMLDTNIAGHVIKGDIPAIREKLASVPMQHVLISSVTQAELLYGLAKRSYPKGLSAR
CCEEEEECCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
VHEFLIRVDILPWNHEVVTVYGDLRARCEASGISLSPLDMMIASHAKAADAVLVTRDRAF
HHHHHHHEECCCCCCEEEEEEECCHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEECCCHH
SRVPDGLRIETGKEIEAIMYVHFFHYFE
HHCCCCCEECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PLYMLDTNIAGHVIKGDIPAIREKLASVPMQHVLISSVTQAELLYGLAKRSYPKGLSAR
CEEEEECCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
VHEFLIRVDILPWNHEVVTVYGDLRARCEASGISLSPLDMMIASHAKAADAVLVTRDRAF
HHHHHHHEECCCCCCEEEEEEECCHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEECCCHH
SRVPDGLRIETGKEIEAIMYVHFFHYFE
HHCCCCCEECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]