Click here to switch to the map view.

The map label for this gene is ybhD [H]

Identifier: 189352313

GI number: 189352313

Start: 363388

End: 364311

Strand: Direct

Name: ybhD [H]

Synonym: BMULJ_03532

Alternate gene names: 189352313

Gene position: 363388-364311 (Clockwise)

Preceding gene: 189352312

Following gene: 189352316

Centisome position: 14.69

GC content: 68.61

Gene sequence:

>924_bases
GTGGGGATCAATTTCGACTTGACCGACTTGCAGGCGTTTCGCGCGGTGGTGGAGCTGGGCAGCTTCCGCAAGGCCGCCGA
CGCGCTCAGCATTTCGCAGCCCGCCTTGAGCCGCCGCATCGACAAGCTCGAGGACGCGCTCGGCGTGCGGTTGTTCGAGC
GCACGACGCGCAGCGTCACGCTGACGACCGTCGGCCGCGTGTTCGCGCCGAGCGCCGAGCAACTGCTCGACGATCTCGAT
GCGGCGCTGCTCGGCATCCGCGACGTGTCCTCGAGCCGCCTCGGTCACGTGACGATCGCGTGCGTGCCGTCGGTCGCGTA
TTACTTCCTGCCGAACGTGATTGCCGAGTATCACCGCCGCTTCCCGCGCATCCGCGTGAAGCTGCTCGATTCGGGTGCGA
ACGAGGTGCTCGGTGCGGTGATCAGCGGCGAGGCCGATTTCGGCGTGAGCTTCATCGGCAGCCAGGAGCCCGAGATCGAC
TTCAAGGTGCTGCTGCAGGAGCGCTTCGTCGCCGCGTGTCGCCGCGATCATCCGCTTGCGCGCAAGAAGCGCGTGACGTG
GGACGAGTTGTACGCGCACGAGTACGTCTCGGTGGACAAGACGTCCGGCAACCGGCTGCTGCTCGACCAGGCGCTGTCGG
GCGTCGCACCGCCCGTGCCGAGCGTATGCGAGACGCGGCACGTGACGACGCTGCTCGGCCTGATCGAGGCGGGGCTCGGC
GTCGCCGCGGTGCCGTCGATGGCGATGCCCGGACGCGACCATCCGATCCTCACGAGCGTACCGCTCGTCGACCCCGTCGT
GAAGCGCCGCGTCGGCATCGTGAAGCGGCGCGGACGGCAACTGACGCCGGCCGCGCAGGCGTTTCACGAGATGGTCGTCG
ACGCGAAGCGCGCGAGTAGTGCGGCGAGCGCGGCCGCATCGTGA

Upstream 100 bases:

>100_bases
GCGGGAGTCCCGATCGACACCCACCGTCAAACCGCCGCACGCCCACTTGCGTCCTTCGCTTCATGCACAATACCGGGCAT
TGAAATGCGGAGGCTGTCCC

Downstream 100 bases:

>100_bases
TACGCGGCCGGCGTGCCAAGCGGCGTGCCGAACGGCGCGCGAGGGACCGCGTGCATGCGGCGGTCGGCTTGCGTCAGCGG
GCCGACACGGGGTCGAGCCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MGINFDLTDLQAFRAVVELGSFRKAADALSISQPALSRRIDKLEDALGVRLFERTTRSVTLTTVGRVFAPSAEQLLDDLD
AALLGIRDVSSSRLGHVTIACVPSVAYYFLPNVIAEYHRRFPRIRVKLLDSGANEVLGAVISGEADFGVSFIGSQEPEID
FKVLLQERFVAACRRDHPLARKKRVTWDELYAHEYVSVDKTSGNRLLLDQALSGVAPPVPSVCETRHVTTLLGLIEAGLG
VAAVPSMAMPGRDHPILTSVPLVDPVVKRRVGIVKRRGRQLTPAAQAFHEMVVDAKRASSAASAAAS

Sequences:

>Translated_307_residues
MGINFDLTDLQAFRAVVELGSFRKAADALSISQPALSRRIDKLEDALGVRLFERTTRSVTLTTVGRVFAPSAEQLLDDLD
AALLGIRDVSSSRLGHVTIACVPSVAYYFLPNVIAEYHRRFPRIRVKLLDSGANEVLGAVISGEADFGVSFIGSQEPEID
FKVLLQERFVAACRRDHPLARKKRVTWDELYAHEYVSVDKTSGNRLLLDQALSGVAPPVPSVCETRHVTTLLGLIEAGLG
VAAVPSMAMPGRDHPILTSVPLVDPVVKRRVGIVKRRGRQLTPAAQAFHEMVVDAKRASSAASAAAS
>Mature_306_residues
GINFDLTDLQAFRAVVELGSFRKAADALSISQPALSRRIDKLEDALGVRLFERTTRSVTLTTVGRVFAPSAEQLLDDLDA
ALLGIRDVSSSRLGHVTIACVPSVAYYFLPNVIAEYHRRFPRIRVKLLDSGANEVLGAVISGEADFGVSFIGSQEPEIDF
KVLLQERFVAACRRDHPLARKKRVTWDELYAHEYVSVDKTSGNRLLLDQALSGVAPPVPSVCETRHVTTLLGLIEAGLGV
AAVPSMAMPGRDHPILTSVPLVDPVVKRRVGIVKRRGRQLTPAAQAFHEMVVDAKRASSAASAAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=42.9065743944637, Blast_Score=273, Evalue=1e-74,
Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=33.445945945946, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI157672245, Length=284, Percent_Identity=31.6901408450704, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1790399, Length=301, Percent_Identity=28.5714285714286, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787601, Length=290, Percent_Identity=28.9655172413793, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787879, Length=298, Percent_Identity=28.1879194630872, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=30.8641975308642, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789204, Length=239, Percent_Identity=25.9414225941423, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081904, Length=221, Percent_Identity=27.1493212669683, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=29.6442687747036, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=25.4355400696864, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788297, Length=240, Percent_Identity=27.5, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790262, Length=296, Percent_Identity=26.0135135135135, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787806, Length=288, Percent_Identity=28.4722222222222, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788706, Length=169, Percent_Identity=28.9940828402367, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789506, Length=296, Percent_Identity=22.972972972973, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI2367136, Length=251, Percent_Identity=25.0996015936255, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790208, Length=149, Percent_Identity=33.5570469798658, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786508, Length=183, Percent_Identity=31.1475409836066, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787589, Length=155, Percent_Identity=32.9032258064516, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789639, Length=123, Percent_Identity=30.8943089430894, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786401, Length=123, Percent_Identity=34.1463414634146, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787128, Length=126, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788296, Length=233, Percent_Identity=27.4678111587983, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=147, Percent_Identity=27.2108843537415, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786713, Length=183, Percent_Identity=30.6010928961749, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789173, Length=147, Percent_Identity=29.2517006802721, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790783, Length=113, Percent_Identity=32.7433628318584, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33303; Mature: 33172

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGINFDLTDLQAFRAVVELGSFRKAADALSISQPALSRRIDKLEDALGVRLFERTTRSVT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE
LTTVGRVFAPSAEQLLDDLDAALLGIRDVSSSRLGHVTIACVPSVAYYFLPNVIAEYHRR
EEHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
FPRIRVKLLDSGANEVLGAVISGEADFGVSFIGSQEPEIDFKVLLQERFVAACRRDHPLA
CHHEEEHHHHCCHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHH
RKKRVTWDELYAHEYVSVDKTSGNRLLLDQALSGVAPPVPSVCETRHVTTLLGLIEAGLG
HHHCCCHHHHHHHHHHEEECCCCCEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
VAAVPSMAMPGRDHPILTSVPLVDPVVKRRVGIVKRRGRQLTPAAQAFHEMVVDAKRASS
HHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AASAAAS
HHHHCCC
>Mature Secondary Structure 
GINFDLTDLQAFRAVVELGSFRKAADALSISQPALSRRIDKLEDALGVRLFERTTRSVT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE
LTTVGRVFAPSAEQLLDDLDAALLGIRDVSSSRLGHVTIACVPSVAYYFLPNVIAEYHRR
EEHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
FPRIRVKLLDSGANEVLGAVISGEADFGVSFIGSQEPEIDFKVLLQERFVAACRRDHPLA
CHHEEEHHHHCCHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHH
RKKRVTWDELYAHEYVSVDKTSGNRLLLDQALSGVAPPVPSVCETRHVTTLLGLIEAGLG
HHHCCCHHHHHHHHHHEEECCCCCEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
VAAVPSMAMPGRDHPILTSVPLVDPVVKRRVGIVKRRGRQLTPAAQAFHEMVVDAKRASS
HHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AASAAAS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]