Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
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Accession | NC_010793 |
Length | 2,008,987 |
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The map label for this gene is 189184831
Identifier: 189184831
GI number: 189184831
Start: 1957003
End: 1958208
Strand: Reverse
Name: 189184831
Synonym: OTT_1924
Alternate gene names: NA
Gene position: 1958208-1957003 (Counterclockwise)
Preceding gene: 189184833
Following gene: 189184830
Centisome position: 97.47
GC content: 31.51
Gene sequence:
>1206_bases TTGGCAGGAGATAAGGCGAATATTTCAATTAACAGAAGATCTTTCGGTAAAATCAGTGGATCGTTCATAACAATCGCAAA GCGAAATGCAAATGACCCTAATATAACAATTATAGCAGAAGGCGCTGAAACAGCATTGAGCTTGCAGCAATCAGGCATTA AAGGTAATATCATTGCTAGTGCAGGAATTTCGAATTTGAGAAATTATTCACCATTTCCTGGTGAAAAAATCATCATTGCA GCAGATAATGATAGCAAAAATCCTATAACTAATAATACTGTAATTAAAGCTGCAAAAACGTTAGAAATGAAGGGAGCGAT AACTTGTATAGTCAAACCACCAGAAAATGGTGATTTTAATAATCTGTTGCAAAGTTGTGGAGACCAGTCAATTAGAGACA TTATAGAACCTGAAATTACTAAACTGACTAAGGCAGTTGAAACAACAAAACTTACTCAAACAGAAAATAATAGTATAGCA AAACAAAATGATATTACAAATGTTAAAGAATTGTATAATAAATCGTCATCTCTATACTATTTAAAACAAGAAGAGGAAGC TAAGGTGGAAGCGATAGTAGTAAACAAATTTTTAGAAAACCATACAGGAATTTATAGTTCAAAAATCTTTAATAATCCTA ATTTAAGGGCAAATATGGTTTTTGATGAAGAGACTCAAAAATCCTGGCCTGCACTCACTATTTTTGTTGAAAATGACAAA GATGAAATTACTGGAGCTAAGATATTAACTCTGAATTCAAAAACATGTAATAAAGCTGATATTCCAGAAAAATCTGTTGG TACAATTAGTGGCTCATTTGCTGAAATTGCTCAACAAAATTCAAAATATTCACCTGTAACAATTATTACAAAAGATATTG AAACAGCGTTAACCATTAGGCAAGCTGGAGTTGAAGGAAAAATCTTATGTGCAATTGAAGCCGAAAATTTGCAAAACTAT AATCCTGGCCCAAAAGAAAAGATTATTCTAGCAGTTAAAAATGACGTAAATACTGAAAAAGCTGAAAAAGTTCTAGAGGA TAAGGAAGCAGTAGTCTGTACAGTCAAAAATGACTTCAATAATGTATTAAAAACTCAAGGATTATATGCTGTTAGAAATA TTATCAGCCCTGAAATAAGAAAACTTAATGAAAAAATTGAATCAATACAAACTAATATACAACCAGGATTATGTCCGAAA CACTAG
Upstream 100 bases:
>100_bases ATAAACCTTCTGAGAAACGAGAGAAAATTATCCAGCATTTACAGCATTTGCAAGAAATTCAAAAGGGGAAATTACCGGAG TACAGGCCATATATCTAAAT
Downstream 100 bases:
>100_bases GCAGAGTATGACACAGCATTTTTTATTTAAAAAACTATAGAGTGAAAAAATATGACAAAAAAATTAAAGCATGATTCATT GGCAAAGACAATCATGAGTG
Product: putative conjugative transfer protein TraI
Products: NA
Alternate protein names: Conjugative Transfer Protein TraI; Conjugal Transfer Protein TraA; MobA/MobL Family Protein
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MAGDKANISINRRSFGKISGSFITIAKRNANDPNITIIAEGAETALSLQQSGIKGNIIASAGISNLRNYSPFPGEKIIIA ADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQSCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIA KQNDITNVKELYNKSSSLYYLKQEEEAKVEAIVVNKFLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPALTIFVENDK DEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIRQAGVEGKILCAIEAENLQNY NPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPK H
Sequences:
>Translated_401_residues MAGDKANISINRRSFGKISGSFITIAKRNANDPNITIIAEGAETALSLQQSGIKGNIIASAGISNLRNYSPFPGEKIIIA ADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQSCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIA KQNDITNVKELYNKSSSLYYLKQEEEAKVEAIVVNKFLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPALTIFVENDK DEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIRQAGVEGKILCAIEAENLQNY NPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPK H >Mature_400_residues AGDKANISINRRSFGKISGSFITIAKRNANDPNITIIAEGAETALSLQQSGIKGNIIASAGISNLRNYSPFPGEKIIIAA DNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQSCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAK QNDITNVKELYNKSSSLYYLKQEEEAKVEAIVVNKFLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPALTIFVENDKD EITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIRQAGVEGKILCAIEAENLQNYN PGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43999; Mature: 43868
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGDKANISINRRSFGKISGSFITIAKRNANDPNITIIAEGAETALSLQQSGIKGNIIAS CCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEE AGISNLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFN CCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHEEECCEEEEEEECCCCCCHH NLLQSCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSSSLYY HHHHHCCCHHHHHHHCHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHCCCCCEEE LKQEEEAKVEAIVVNKFLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPALTIFVENDK EECCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEECCC DEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIR CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCHHHHHHHH QAGVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFN HCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCEEEEEECCHHH NVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH HHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AGDKANISINRRSFGKISGSFITIAKRNANDPNITIIAEGAETALSLQQSGIKGNIIAS CCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEE AGISNLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFN CCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHEEECCEEEEEEECCCCCCHH NLLQSCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSSSLYY HHHHHCCCHHHHHHHCHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHCCCCCEEE LKQEEEAKVEAIVVNKFLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPALTIFVENDK EECCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEECCC DEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIR CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCHHHHHHHH QAGVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFN HCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCEEEEEECCHHH NVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH HHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA