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The map label for this gene is ykfC [H]

Identifier: 189184789

GI number: 189184789

Start: 1924190

End: 1925329

Strand: Reverse

Name: ykfC [H]

Synonym: OTT_1882

Alternate gene names: 189184789

Gene position: 1925329-1924190 (Counterclockwise)

Preceding gene: 189184792

Following gene: 189184787

Centisome position: 95.84

GC content: 34.21

Gene sequence:

>1140_bases
ATGGCTGTACACAGCATAGACAGAAATACATGGTTAACGAAACTTGAGCGTATAAAGTTGCTATCATCGAAAAATCAAGA
CATAAAGTTTAATAATCTTGGACATATCATTGATTTAAAGATGTTAGAAGAACAATATAAGGAACTCGATAGCAAGAAAG
CTATAGGAATGGACGGTATAACCAAAGAGGATTATGGTAAGAAATTGAAAGCAAATCTGCTCTCGCTTCTTACAAGAATT
CGCAAAGGGCAATATCAAGCTAAACCTGCACGAATAGTGAAAATTCCAAAAGAAGATGGAGGCAAAAGACCTTTGGTAAT
ATCATGTTTTGAAGATAAGATAATCGAGTCTGCAGTAAGCAAGATACTAAACTCTGTGTTTGAGCCAATATTCTTAAAGT
ATTCATATGGATTCCGCCCTAAATTAAATGCACACGATGCGTTAAGGGAGTTAAATAGACTTACGTATAACTTCAATAAA
GGGGCTATAGTAGAGATTGATATAACAAAGTGTTTCAATACAATCAAGCATTGTGAGTTGATGGAATTTCTAAGAAAGAG
AATATCTGACAAGAAATTTCTAAGACTTATTATGAAACTGATTGAAACACCAATCATAGAAAATGGTACTATAGTTACTA
ACAAAGAAGGTTGTCGTCAAGGCTCAATAGTTTCGCCGATTCTGGCAAATGTCTTTCTGCATTATGTTATAGATAGCTGG
TTTGCTAAAATCAGCAAAGAAAACTTAATTGGACAAACAGGAATGGTGAGATATTGCGACGATATGGTATTTGTCTTTGA
AATGAAAGCAGATGCGAAAAGGTTTTATGATGTTTTGCCTAAAAGGTTAAATAAGTATGGGCTAAATATCAATGAAGCTA
AATCACAAATGATTAAATCTGGTAGAGACCATGCTGCAAATTTAGCCAAACAAGGCAAAAAGATCGCAAGTTATAATTTT
CTTGGATTTACTTGCTATTGGGGCAAATCAAGATTTGGCACAACATGGAGACTAAAATATACCTCAAGAAGAGATCGCTT
TACCGAGAAACTGAAAGGACTGAGAAAATATTTGCGTAGTCAGCTAAACAAGCAAGATAGAACACAAACATTATCACAAG
TCATTAGAGTTATTAGGTGA

Upstream 100 bases:

>100_bases
ATGGTGTAAGGATGGCTGAGTTAACCATAGTAGTGATGAAACCAAGTAATGTTGGTGGAGCGAAGGGTTAGCAGAAAAGT
AAGAATGCAAGAGGGAAACA

Downstream 100 bases:

>100_bases
ATGGATCAACTATCATGGTATATCGGATAACAAAAGACGAGTAAGTTCATTTATCAACCAAAGTACACGTGCAATATATA
ACTGGTTCAATAGAATGGGA

Product: reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGMDGITKEDYGKKLKANLLSLLTRI
RKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESAVSKILNSVFEPIFLKYSYGFRPKLNAHDALRELNRLTYNFNK
GAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLIMKLIETPIIENGTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
FAKISKENLIGQTGMVRYCDDMVFVFEMKADAKRFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNF
LGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRSQLNKQDRTQTLSQVIRVIR

Sequences:

>Translated_379_residues
MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGMDGITKEDYGKKLKANLLSLLTRI
RKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESAVSKILNSVFEPIFLKYSYGFRPKLNAHDALRELNRLTYNFNK
GAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLIMKLIETPIIENGTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
FAKISKENLIGQTGMVRYCDDMVFVFEMKADAKRFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNF
LGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRSQLNKQDRTQTLSQVIRVIR
>Mature_378_residues
AVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGMDGITKEDYGKKLKANLLSLLTRIR
KGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESAVSKILNSVFEPIFLKYSYGFRPKLNAHDALRELNRLTYNFNKG
AIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLIMKLIETPIIENGTIVTNKEGCRQGSIVSPILANVFLHYVIDSWF
AKISKENLIGQTGMVRYCDDMVFVFEMKADAKRFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNFL
GFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRSQLNKQDRTQTLSQVIRVIR

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=306, Percent_Identity=29.4117647058824, Blast_Score=115, Evalue=9e-27,
Organism=Saccharomyces cerevisiae, GI6226521, Length=206, Percent_Identity=33.9805825242718, Blast_Score=106, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 44085; Mature: 43954

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGMDGI
CCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
TKEDYGKKLKANLLSLLTRIRKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESAVS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHH
KILNSVFEPIFLKYSYGFRPKLNAHDALRELNRLTYNFNKGAIVEIDITKCFNTIKHCEL
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEHHHHHHHHHHHHH
MEFLRKRISDKKFLRLIMKLIETPIIENGTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
HHHHHHHHCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
FAKISKENLIGQTGMVRYCDDMVFVFEMKADAKRFYDVLPKRLNKYGLNINEAKSQMIKS
HHHHHHHHHCCCCCHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GRDHAANLAKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRS
CCHHHHHHHHCCCHHHCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
QLNKQDRTQTLSQVIRVIR
HHCHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
AVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGMDGI
CCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
TKEDYGKKLKANLLSLLTRIRKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESAVS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHH
KILNSVFEPIFLKYSYGFRPKLNAHDALRELNRLTYNFNKGAIVEIDITKCFNTIKHCEL
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEHHHHHHHHHHHHH
MEFLRKRISDKKFLRLIMKLIETPIIENGTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
HHHHHHHHCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
FAKISKENLIGQTGMVRYCDDMVFVFEMKADAKRFYDVLPKRLNKYGLNINEAKSQMIKS
HHHHHHHHHCCCCCHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GRDHAANLAKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRS
CCHHHHHHHHCCCHHHCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
QLNKQDRTQTLSQVIRVIR
HHCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]