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The map label for this gene is holB

Identifier: 189184770

GI number: 189184770

Start: 1897868

End: 1898740

Strand: Reverse

Name: holB

Synonym: OTT_1863

Alternate gene names: NA

Gene position: 1898740-1897868 (Counterclockwise)

Preceding gene: 189184771

Following gene: 189184769

Centisome position: 94.51

GC content: 26.8

Gene sequence:

>873_bases
ATGCTAAATACTTTCATAAAAAATTGGCAAAATAACATTTTTGCCAATGCCTGGATAATTAATACTGATAACTCTGATAG
TGCTTTGAGTATTTTACTGAAATTTTGCAATAAAATACTCAATCACCATAATAATGCTGTTTTTCACCAAGATATGATTT
TAGTTAAACGTAGGTCTATGAATGGTAATAGCAATGATAAATTTATTACTGTTGATCAAATACGTGATATGCTATTTTTT
CTGAATAAAACACCGATAAAATCAGCTATAAAAATTGCAATTATATACGAAGCAGAATATATGAATATTAATTCTGCTAA
TTGTTGTCTTAAAATACTTGAAGATCCACCTATTAATCGCTACATTTTCTTAATTACTACTAAATTTGCAAGCATACTTT
CTACAATTAAATCTCGTTGCCATTTACTTACTCAAAAATTTGATCATTGTAATAATACCGCATTAGCAGCATATTCTCAA
GTTGAATACCAAAATCTAATTAATATGCTTAATACCCAAACTACAAAAATTCAATTAGAATTTATTCAAAAAATAAAATC
TATACAACTCAATTCACAAGAATGGTATAAATTTGGTCAAGCTTGCATGATATTAATTGTAAAATCTATCAGATATAAAG
TTGGCTTTAAGGAAGCTAAAGATCATAGCAATAATGATTGCGCCATTGCTGAAATGAGAGTTATTGAAAAAATCAGCAAT
ACTAATTCAACTGAGGAGCTAGTTCAAAAATATGACAAGGTAAGTAATATTCTATACAACACTAATAATGTTGACTTAGA
TGTTGGTAATGCTACGTTATTAATATTATCACTAATGCAAAACCAATTGAATTTTCATGAAAATAACAATTAA

Upstream 100 bases:

>100_bases
TCAAAGTAGAAGATTTTTTTAATCAGTCAACAGCAAAAGCTATTATTAATCAGTCAATTAAAACTAACTTAAGCTAAATG
CGATTTGATTTTGTGTATTT

Downstream 100 bases:

>100_bases
TGACTGCTTAGTTACAACGAGGCTTGATAAATTCTTAAAAAGAAAATATTCGCACCTTACACAAGGTGTAATAGAGCGTG
GAATAAGAAAGGGGCATATA

Product: DNA polymerase III subunit delta'

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MLNTFIKNWQNNIFANAWIINTDNSDSALSILLKFCNKILNHHNNAVFHQDMILVKRRSMNGNSNDKFITVDQIRDMLFF
LNKTPIKSAIKIAIIYEAEYMNINSANCCLKILEDPPINRYIFLITTKFASILSTIKSRCHLLTQKFDHCNNTALAAYSQ
VEYQNLINMLNTQTTKIQLEFIQKIKSIQLNSQEWYKFGQACMILIVKSIRYKVGFKEAKDHSNNDCAIAEMRVIEKISN
TNSTEELVQKYDKVSNILYNTNNVDLDVGNATLLILSLMQNQLNFHENNN

Sequences:

>Translated_290_residues
MLNTFIKNWQNNIFANAWIINTDNSDSALSILLKFCNKILNHHNNAVFHQDMILVKRRSMNGNSNDKFITVDQIRDMLFF
LNKTPIKSAIKIAIIYEAEYMNINSANCCLKILEDPPINRYIFLITTKFASILSTIKSRCHLLTQKFDHCNNTALAAYSQ
VEYQNLINMLNTQTTKIQLEFIQKIKSIQLNSQEWYKFGQACMILIVKSIRYKVGFKEAKDHSNNDCAIAEMRVIEKISN
TNSTEELVQKYDKVSNILYNTNNVDLDVGNATLLILSLMQNQLNFHENNN
>Mature_290_residues
MLNTFIKNWQNNIFANAWIINTDNSDSALSILLKFCNKILNHHNNAVFHQDMILVKRRSMNGNSNDKFITVDQIRDMLFF
LNKTPIKSAIKIAIIYEAEYMNINSANCCLKILEDPPINRYIFLITTKFASILSTIKSRCHLLTQKFDHCNNTALAAYSQ
VEYQNLINMLNTQTTKIQLEFIQKIKSIQLNSQEWYKFGQACMILIVKSIRYKVGFKEAKDHSNNDCAIAEMRVIEKISN
TNSTEELVQKYDKVSNILYNTNNVDLDVGNATLLILSLMQNQLNFHENNN

Specific function: Unknown

COG id: COG0470

COG function: function code L; ATPase involved in DNA replication

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 33534; Mature: 33534

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTFIKNWQNNIFANAWIINTDNSDSALSILLKFCNKILNHHNNAVFHQDMILVKRRSM
CCCHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCC
NGNSNDKFITVDQIRDMLFFLNKTPIKSAIKIAIIYEAEYMNINSANCCLKILEDPPINR
CCCCCCCEEEHHHHHHHHHHHCCCCCHHHEEEEEEEEEEEECCCCHHHHHEECCCCCCCC
YIFLITTKFASILSTIKSRCHLLTQKFDHCNNTALAAYSQVEYQNLINMLNTQTTKIQLE
EEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHEEHHH
FIQKIKSIQLNSQEWYKFGQACMILIVKSIRYKVGFKEAKDHSNNDCAIAEMRVIEKISN
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHC
TNSTEELVQKYDKVSNILYNTNNVDLDVGNATLLILSLMQNQLNFHENNN
CCCHHHHHHHHHHHHHHEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLNTFIKNWQNNIFANAWIINTDNSDSALSILLKFCNKILNHHNNAVFHQDMILVKRRSM
CCCHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCC
NGNSNDKFITVDQIRDMLFFLNKTPIKSAIKIAIIYEAEYMNINSANCCLKILEDPPINR
CCCCCCCEEEHHHHHHHHHHHCCCCCHHHEEEEEEEEEEEECCCCHHHHHEECCCCCCCC
YIFLITTKFASILSTIKSRCHLLTQKFDHCNNTALAAYSQVEYQNLINMLNTQTTKIQLE
EEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHEEHHH
FIQKIKSIQLNSQEWYKFGQACMILIVKSIRYKVGFKEAKDHSNNDCAIAEMRVIEKISN
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHC
TNSTEELVQKYDKVSNILYNTNNVDLDVGNATLLILSLMQNQLNFHENNN
CCCHHHHHHHHHHHHHHEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA