Definition Orientia tsutsugamushi str. Ikeda, complete genome.
Accession NC_010793
Length 2,008,987

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The map label for this gene is pgsA [H]

Identifier: 189184671

GI number: 189184671

Start: 1785167

End: 1785715

Strand: Reverse

Name: pgsA [H]

Synonym: OTT_1764

Alternate gene names: 189184671

Gene position: 1785715-1785167 (Counterclockwise)

Preceding gene: 189184672

Following gene: 189184651

Centisome position: 88.89

GC content: 28.23

Gene sequence:

>549_bases
ATGCAGTTAACCAGAAAAATACCAAATATTCTAACAGCTACTAGAATTAGTATAATACCAATTATACTAATTACTTTTTA
TTTTGATGATGTTATTTTTTCCCATCAATTGGCAGCTACCTTATTTGTTATTGCTGGTATAACAGATTTTTTTGATGGGT
ATATAGCTAGAAAACTTAATTTACATAGCAGTTTTGGTAGAATGCTTGATCATATTGCTGATAAATTATTAGTTGGCAGC
ATTCTTATAATGATAGTAAAATTTAGAAAAGCTCAAGAGTTACCATGCTTATTAATTTTATGTCGAGAATTTTTAGTAGC
TGGCATGAGAGAATTCTTAAGCCAAATTAAAGTTAGTGTTCCAGTATCTAGGCTTGCAAAAATAAAAACTACATGTCAAT
TTTCTGCTTTAGCTATTTTACTATTAGGTTCTAAGGGATCTGGAATTCATATGTTAGATATAGTAGGACAAATTACTTTG
TGGATAGCAGCAATCTTGACTATTATTACTGGATATTCTTACTTGAAAGTATGTATTAAATATTTTTAA

Upstream 100 bases:

>100_bases
GTTGCAGTAAGCAACAGTATACAATTATGTATATGTTTAATTTCTTATAGAATAATTTTATAACGTAGTCTTAAAGAATT
ATTAAAGAGCTAAAAACAAT

Downstream 100 bases:

>100_bases
TTAGATCACTTTGAAAACTAAAGTTCCGGTATAATCTGAGTTGGATATAAGAGATCAGAGCTAATGTAAAGCAAGGAAAA
GATAATTTAACTTAAGAAGA

Product: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase

Products: NA

Alternate protein names: Phosphatidylglycerophosphate synthase; PGP synthase [H]

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MQLTRKIPNILTATRISIIPIILITFYFDDVIFSHQLAATLFVIAGITDFFDGYIARKLNLHSSFGRMLDHIADKLLVGS
ILIMIVKFRKAQELPCLLILCREFLVAGMREFLSQIKVSVPVSRLAKIKTTCQFSALAILLLGSKGSGIHMLDIVGQITL
WIAAILTIITGYSYLKVCIKYF

Sequences:

>Translated_182_residues
MQLTRKIPNILTATRISIIPIILITFYFDDVIFSHQLAATLFVIAGITDFFDGYIARKLNLHSSFGRMLDHIADKLLVGS
ILIMIVKFRKAQELPCLLILCREFLVAGMREFLSQIKVSVPVSRLAKIKTTCQFSALAILLLGSKGSGIHMLDIVGQITL
WIAAILTIITGYSYLKVCIKYF
>Mature_182_residues
MQLTRKIPNILTATRISIIPIILITFYFDDVIFSHQLAATLFVIAGITDFFDGYIARKLNLHSSFGRMLDHIADKLLVGS
ILIMIVKFRKAQELPCLLILCREFLVAGMREFLSQIKVSVPVSRLAKIKTTCQFSALAILLLGSKGSGIHMLDIVGQITL
WIAAILTIITGYSYLKVCIKYF

Specific function: This protein catalyzes the committed step to the synthesis of the acidic phospholipids [H]

COG id: COG0558

COG function: function code I; Phosphatidylglycerophosphate synthase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CDP-alcohol phosphatidyltransferase class-I family [H]

Homologues:

Organism=Escherichia coli, GI1788220, Length=164, Percent_Identity=34.7560975609756, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000462
- InterPro:   IPR004570 [H]

Pfam domain/function: PF01066 CDP-OH_P_transf [H]

EC number: =2.7.8.5 [H]

Molecular weight: Translated: 20395; Mature: 20395

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLTRKIPNILTATRISIIPIILITFYFDDVIFSHQLAATLFVIAGITDFFDGYIARKLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHSSFGRMLDHIADKLLVGSILIMIVKFRKAQELPCLLILCREFLVAGMREFLSQIKVSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
PVSRLAKIKTTCQFSALAILLLGSKGSGIHMLDIVGQITLWIAAILTIITGYSYLKVCIK
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YF
HC
>Mature Secondary Structure
MQLTRKIPNILTATRISIIPIILITFYFDDVIFSHQLAATLFVIAGITDFFDGYIARKLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHSSFGRMLDHIADKLLVGSILIMIVKFRKAQELPCLLILCREFLVAGMREFLSQIKVSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
PVSRLAKIKTTCQFSALAILLLGSKGSGIHMLDIVGQITLWIAAILTIITGYSYLKVCIK
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YF
HC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA