Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
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Accession | NC_010793 |
Length | 2,008,987 |
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The map label for this gene is 189184636
Identifier: 189184636
GI number: 189184636
Start: 1750585
End: 1751133
Strand: Reverse
Name: 189184636
Synonym: OTT_1729
Alternate gene names: NA
Gene position: 1751133-1750585 (Counterclockwise)
Preceding gene: 189184637
Following gene: 189184634
Centisome position: 87.16
GC content: 31.88
Gene sequence:
>549_bases ATGAATGTTTTGAAATCAATTTTACAACCGTGTTATGCTGTTATATTAGCATTCGTTGTATTATCTTCACCATCGATATG TACAGCGAATAATAATGTAAACTTCAATGCTTTCAAAGATAGTATTGATACTTCACAATTCTATATAAAATTTTCAACTG GTATTGCTACTAACTACGACACATTAGAAGCTGGAATTGGTTATAGATTAGATCGGCACAGAATGGATGTAAGATTAGGA TTTATGTGTCATCACAACTGTAGAGATAACTTTGTTCAAGGAAATTATTATTACAATATAATTGAAGGTAACAAAGCATC AATTTTTGTTACAGGTGGCCTAGAATCAGCTTTCAATAGTGATAGCGGTACTGGTATAGACTTGGGAGTTGGTACAACAA TAAACTTATCAAGAGATACATATTTAGACGGAGTTGGTACAACAATAAATTTATCAAGAGATACATATTTAGACATTGAA TGCAGCACAATTGCTAACTATAGACCACTTCCTATTCATATACGATTTGGATTGCGGGTTCACATTTAA
Upstream 100 bases:
>100_bases GTAATGCAGATATATTCAACTTTCTAACGGAACAATGGGTCCCATGGTATTAGGTTTCAACAGATAGCTAATATGTTAAT GCTAATAAAGAGAAGTTAAT
Downstream 100 bases:
>100_bases TAACTAGCAAGTTTTATAGTTAGTAATGATTAGCTCATTAACAGGATTGCGTTGTTCATTGATTGAGTATACGACTGTAA CGGTATTGATATTAAAATCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MNVLKSILQPCYAVILAFVVLSSPSICTANNNVNFNAFKDSIDTSQFYIKFSTGIATNYDTLEAGIGYRLDRHRMDVRLG FMCHHNCRDNFVQGNYYYNIIEGNKASIFVTGGLESAFNSDSGTGIDLGVGTTINLSRDTYLDGVGTTINLSRDTYLDIE CSTIANYRPLPIHIRFGLRVHI
Sequences:
>Translated_182_residues MNVLKSILQPCYAVILAFVVLSSPSICTANNNVNFNAFKDSIDTSQFYIKFSTGIATNYDTLEAGIGYRLDRHRMDVRLG FMCHHNCRDNFVQGNYYYNIIEGNKASIFVTGGLESAFNSDSGTGIDLGVGTTINLSRDTYLDGVGTTINLSRDTYLDIE CSTIANYRPLPIHIRFGLRVHI >Mature_182_residues MNVLKSILQPCYAVILAFVVLSSPSICTANNNVNFNAFKDSIDTSQFYIKFSTGIATNYDTLEAGIGYRLDRHRMDVRLG FMCHHNCRDNFVQGNYYYNIIEGNKASIFVTGGLESAFNSDSGTGIDLGVGTTINLSRDTYLDGVGTTINLSRDTYLDIE CSTIANYRPLPIHIRFGLRVHI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20242; Mature: 20242
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVLKSILQPCYAVILAFVVLSSPSICTANNNVNFNAFKDSIDTSQFYIKFSTGIATNYD CHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCEEEEEEEECCCCCCCC TLEAGIGYRLDRHRMDVRLGFMCHHNCRDNFVQGNYYYNIIEGNKASIFVTGGLESAFNS HHHCCCCEEECCEEEEEEEEEEEECCCCCCEEECCEEEEEEECCCEEEEEECCCCHHCCC DSGTGIDLGVGTTINLSRDTYLDGVGTTINLSRDTYLDIECSTIANYRPLPIHIRFGLRV CCCCEEEEECCCEEEECCCCEECCCCCEEEECCCEEEEEEEHHCCCCCCCEEEEEEEEEE HI EC >Mature Secondary Structure MNVLKSILQPCYAVILAFVVLSSPSICTANNNVNFNAFKDSIDTSQFYIKFSTGIATNYD CHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCEEEEEEEECCCCCCCC TLEAGIGYRLDRHRMDVRLGFMCHHNCRDNFVQGNYYYNIIEGNKASIFVTGGLESAFNS HHHCCCCEEECCEEEEEEEEEEEECCCCCCEEECCEEEEEEECCCEEEEEECCCCHHCCC DSGTGIDLGVGTTINLSRDTYLDGVGTTINLSRDTYLDIECSTIANYRPLPIHIRFGLRV CCCCEEEEECCCEEEECCCCEECCCCCEEEECCCEEEEEEEHHCCCCCCCEEEEEEEEEE HI EC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA