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The map label for this gene is ykfC [H]

Identifier: 189184440

GI number: 189184440

Start: 1560448

End: 1561383

Strand: Reverse

Name: ykfC [H]

Synonym: OTT_1533

Alternate gene names: 189184440

Gene position: 1561383-1560448 (Counterclockwise)

Preceding gene: 189184442

Following gene: 189184436

Centisome position: 77.72

GC content: 33.97

Gene sequence:

>936_bases
TTGAAAGCAAATCTGCTCTCGCTTCTTACAAGAATTCGCAAAGGGCAATATCAAGCTAAACCTGCACGAATAGTGAAAAT
TCCAAAAGAAGATGGAGACAAAAGACCTTTGGTAATATCATGTTTTGAAGATAAGATAATCGAGTCTGCAGTAAGCAAGA
TACTAAACTCTGTGTTTGAGCCAATATTCTTAAAGTATTCATATGGATTTCGACCTAAGTTAAATGCACACGATGCTTTA
AGGGAGTTAAATAGACTTACGTATAACTTCAATAAAGGGGCTATAGTAGAGATTGATATAACAAAGTGTTTCAATACAAT
CAAGCATTGTGAGTTGATGGAATTTCTAAGAAAGAGAATATCTGACAAGAAATTTCTAAGACTAGTTATGAAACTGATTG
AAACACCAATCATAGAAAATGATACTATAGTTACTAACAAAGAAGGTTGCCGTCAAGGCTCAATAGTTTCGCCAATTCTG
GCTAATATCTTTCTGCATTATGTTATAGATAGCTGGTTTGCCAAAATCAGCAAAGAAAACTTAATTGGACAAACAGGAAT
GGTGATGTATTGCAACGATATGGTATTTGTCTTTGAAAGGGAAGCAGATGCGAAAAAGTTTTATGATGTTTTGCCTAAAA
GGTTAAATAAGTATGGGCTAAATATCAATGAAGCTAAATCACAAATGATAAAATCTGGTAGAGACCATGCTGCAAATTTA
GCAAAACAAGGCAAAAAGATCGCAAGTTATAATTTTCTTGGATTTACTTGCTATTGGGGCAAATCAAGATTTGGTACAAC
ATGGAGACTAAAATATACCTCAAGGAGAGATCGTTTTACTGAGAAACTGAAAGGACTGAGAAAATATTTGCGTGGTCAGC
TAAATACGCAAGACAAAACACAGACATTATCACAAATCATTAGAGTTATTAGGTGA

Upstream 100 bases:

>100_bases
CTTTTGTGCTATTGCTATAATCTTTTATTTTATTGCAATTTCACTTATTTTTATCATACAAGGAATAGATGGTATAACCA
AAGAGGATTATGGTAAGAAA

Downstream 100 bases:

>100_bases
ATGGATCAACTATCATGGTATAATCTGATAACAAAAGACGAGTAAGTTCATTTATCAACCAAAGTAAACGGGCAATATAT
AACTGGTTTAATAGAATGGG

Product: reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKANLLSLLTRIRKGQYQAKPARIVKIPKEDGDKRPLVISCFEDKIIESAVSKILNSVFEPIFLKYSYGFRPKLNAHDAL
RELNRLTYNFNKGAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPIL
ANIFLHYVIDSWFAKISKENLIGQTGMVMYCNDMVFVFEREADAKKFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANL
AKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRGQLNTQDKTQTLSQIIRVIR

Sequences:

>Translated_311_residues
MKANLLSLLTRIRKGQYQAKPARIVKIPKEDGDKRPLVISCFEDKIIESAVSKILNSVFEPIFLKYSYGFRPKLNAHDAL
RELNRLTYNFNKGAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPIL
ANIFLHYVIDSWFAKISKENLIGQTGMVMYCNDMVFVFEREADAKKFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANL
AKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRGQLNTQDKTQTLSQIIRVIR
>Mature_311_residues
MKANLLSLLTRIRKGQYQAKPARIVKIPKEDGDKRPLVISCFEDKIIESAVSKILNSVFEPIFLKYSYGFRPKLNAHDAL
RELNRLTYNFNKGAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPIL
ANIFLHYVIDSWFAKISKENLIGQTGMVMYCNDMVFVFEREADAKKFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANL
AKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRGQLNTQDKTQTLSQIIRVIR

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=160, Percent_Identity=36.25, Blast_Score=105, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6226521, Length=156, Percent_Identity=35.8974358974359, Blast_Score=99, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 36203; Mature: 36203

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKANLLSLLTRIRKGQYQAKPARIVKIPKEDGDKRPLVISCFEDKIIESAVSKILNSVFE
CCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH
PIFLKYSYGFRPKLNAHDALRELNRLTYNFNKGAIVEIDITKCFNTIKHCELMEFLRKRI
HHEEHCCCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
SDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANIFLHYVIDSWFAKISKEN
CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LIGQTGMVMYCNDMVFVFEREADAKKFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANL
HCCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHH
AKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRGQLNTQDKT
HHCCCHHHCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHH
QTLSQIIRVIR
HHHHHHHHHHC
>Mature Secondary Structure
MKANLLSLLTRIRKGQYQAKPARIVKIPKEDGDKRPLVISCFEDKIIESAVSKILNSVFE
CCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH
PIFLKYSYGFRPKLNAHDALRELNRLTYNFNKGAIVEIDITKCFNTIKHCELMEFLRKRI
HHEEHCCCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
SDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANIFLHYVIDSWFAKISKEN
CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LIGQTGMVMYCNDMVFVFEREADAKKFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANL
HCCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHH
AKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRGQLNTQDKT
HHCCCHHHCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHH
QTLSQIIRVIR
HHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]