Click here to switch to the map view.

The map label for this gene is yhcM [H]

Identifier: 189183416

GI number: 189183416

Start: 530446

End: 531519

Strand: Direct

Name: yhcM [H]

Synonym: OTT_0509

Alternate gene names: 189183416

Gene position: 530446-531519 (Clockwise)

Preceding gene: 189183415

Following gene: 189183417

Centisome position: 26.4

GC content: 25.98

Gene sequence:

>1074_bases
ATGGATATTAAGTCTTATTTTGCTAGTAAAAAAGAATTAAATCCTAGCCAAATAGAGCTAATATCTATTCTACAGAGTAT
TAGCGATTACTTTAATAGCAGAAAGATTATTAGATATTTTCGCCAATTACCGTATAATGGAACATATATTTATGGTAAAG
TAGGAAGCGGAAAAACTATGCTTATGCAAGCTCTGAATCAATCGTTAGAAAAGTTAGGAGAAGTAGGGTATTTTCACTAT
CAGTTTTTAATGCATAGCTTACATAAAGTTGTAAGACAAAACACAAGCAACCATACTGATAATAGCAATAATTTAATGAA
AACATTAGCATATGAGTATTCTAGCAAATATCGAATTATTCTAATAGATGAGTTTGAAATAACAGATATTGCTGAAGCAC
TATTGATCGGTAGTTTTATAAAATGGCTGTTTATTAAAAAAGTTTATATAGTATTAACTAGCAATATTGCTCCAGAACTT
TTATATAATAACAGATTAAAGAGAGAATTATTTCTACCTTATATAGATACTATTAAGCAAAATATGCAAATATTTTATCT
AAAGTCAGATCATGATTATAGAAAAGCTAAAATACAGTCAAAAGAACAAAGAATACTTATTGGAATAGATGCAAATAAGC
AACTACAATTAATCATTGATAAGTTAATTAGGAACAAAGAGTTATTGAATCATAATGTAAAAGTTTTGGGGCGTAATCTT
AATGTAAATAATAATTATGGTAATATCTTAATTATAACTTTTGATGAGCTATGCTATCAAGAAAGATCATACAATGATTA
TATTGCTATGTGTCAGCATTTTGATATTATCATTGTTAGAAATGTAACCATTATTGAAAGCGCTAATAATGATGTCATAA
TAAGATTTATTAATTTTATAGATAACGCTTATAGCATGAAAGTACTAATTTATATGAGCGTTAATACATCACTTGATCAA
ATATATATAGGACATAATTATCAACAACCTTTTCAAAGAACATTATCTAGGCTATATGAAATGAATAGTAATGAATATTT
ATTTCATTCAAAATATCAAGAGGTATATGAGTAA

Upstream 100 bases:

>100_bases
ATATTACTTAATCATAATCATACTATTTGAATTAATTCAAAATTCATTAATTGAGTACTATATACAATGAGCAAGAGGAT
ATTAGTAAAAAATAACTGCA

Downstream 100 bases:

>100_bases
TACTACAATAGGAAAATTTATAACTTTTGAAGGAAATGAAGGAAGCGGCAAAACTACTCAAAGCAAACTACTTTATGAAA
AATTATTAGATAATGGTATA

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MDIKSYFASKKELNPSQIELISILQSISDYFNSRKIIRYFRQLPYNGTYIYGKVGSGKTMLMQALNQSLEKLGEVGYFHY
QFLMHSLHKVVRQNTSNHTDNSNNLMKTLAYEYSSKYRIILIDEFEITDIAEALLIGSFIKWLFIKKVYIVLTSNIAPEL
LYNNRLKRELFLPYIDTIKQNMQIFYLKSDHDYRKAKIQSKEQRILIGIDANKQLQLIIDKLIRNKELLNHNVKVLGRNL
NVNNNYGNILIITFDELCYQERSYNDYIAMCQHFDIIIVRNVTIIESANNDVIIRFINFIDNAYSMKVLIYMSVNTSLDQ
IYIGHNYQQPFQRTLSRLYEMNSNEYLFHSKYQEVYE

Sequences:

>Translated_357_residues
MDIKSYFASKKELNPSQIELISILQSISDYFNSRKIIRYFRQLPYNGTYIYGKVGSGKTMLMQALNQSLEKLGEVGYFHY
QFLMHSLHKVVRQNTSNHTDNSNNLMKTLAYEYSSKYRIILIDEFEITDIAEALLIGSFIKWLFIKKVYIVLTSNIAPEL
LYNNRLKRELFLPYIDTIKQNMQIFYLKSDHDYRKAKIQSKEQRILIGIDANKQLQLIIDKLIRNKELLNHNVKVLGRNL
NVNNNYGNILIITFDELCYQERSYNDYIAMCQHFDIIIVRNVTIIESANNDVIIRFINFIDNAYSMKVLIYMSVNTSLDQ
IYIGHNYQQPFQRTLSRLYEMNSNEYLFHSKYQEVYE
>Mature_357_residues
MDIKSYFASKKELNPSQIELISILQSISDYFNSRKIIRYFRQLPYNGTYIYGKVGSGKTMLMQALNQSLEKLGEVGYFHY
QFLMHSLHKVVRQNTSNHTDNSNNLMKTLAYEYSSKYRIILIDEFEITDIAEALLIGSFIKWLFIKKVYIVLTSNIAPEL
LYNNRLKRELFLPYIDTIKQNMQIFYLKSDHDYRKAKIQSKEQRILIGIDANKQLQLIIDKLIRNKELLNHNVKVLGRNL
NVNNNYGNILIITFDELCYQERSYNDYIAMCQHFDIIIVRNVTIIESANNDVIIRFINFIDNAYSMKVLIYMSVNTSLDQ
IYIGHNYQQPFQRTLSRLYEMNSNEYLFHSKYQEVYE

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=352, Percent_Identity=29.5454545454545, Blast_Score=155, Evalue=5e-38,
Organism=Escherichia coli, GI1789627, Length=336, Percent_Identity=28.8690476190476, Blast_Score=151, Evalue=7e-38,
Organism=Caenorhabditis elegans, GI17505769, Length=343, Percent_Identity=27.6967930029155, Blast_Score=142, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6320783, Length=294, Percent_Identity=26.8707482993197, Blast_Score=101, Evalue=2e-22,
Organism=Drosophila melanogaster, GI20129913, Length=343, Percent_Identity=27.6967930029155, Blast_Score=128, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42346; Mature: 42346

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKSYFASKKELNPSQIELISILQSISDYFNSRKIIRYFRQLPYNGTYIYGKVGSGKTM
CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEECCCHHH
LMQALNQSLEKLGEVGYFHYQFLMHSLHKVVRQNTSNHTDNSNNLMKTLAYEYSSKYRII
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEE
LIDEFEITDIAEALLIGSFIKWLFIKKVYIVLTSNIAPELLYNNRLKRELFLPYIDTIKQ
EEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHCCCHHHHHHHHHHHHHHC
NMQIFYLKSDHDYRKAKIQSKEQRILIGIDANKQLQLIIDKLIRNKELLNHNVKVLGRNL
CCEEEEEECCCCHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
NVNNNYGNILIITFDELCYQERSYNDYIAMCQHFDIIIVRNVTIIESANNDVIIRFINFI
CCCCCCCCEEEEEEHHHHHHHCCCCHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEHHHH
DNAYSMKVLIYMSVNTSLDQIYIGHNYQQPFQRTLSRLYEMNSNEYLFHSKYQEVYE
CCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHCC
>Mature Secondary Structure
MDIKSYFASKKELNPSQIELISILQSISDYFNSRKIIRYFRQLPYNGTYIYGKVGSGKTM
CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEECCCHHH
LMQALNQSLEKLGEVGYFHYQFLMHSLHKVVRQNTSNHTDNSNNLMKTLAYEYSSKYRII
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEE
LIDEFEITDIAEALLIGSFIKWLFIKKVYIVLTSNIAPELLYNNRLKRELFLPYIDTIKQ
EEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHCCCHHHHHHHHHHHHHHC
NMQIFYLKSDHDYRKAKIQSKEQRILIGIDANKQLQLIIDKLIRNKELLNHNVKVLGRNL
CCEEEEEECCCCHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
NVNNNYGNILIITFDELCYQERSYNDYIAMCQHFDIIIVRNVTIIESANNDVIIRFINFI
CCCCCCCCEEEEEEHHHHHHHCCCCHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEHHHH
DNAYSMKVLIYMSVNTSLDQIYIGHNYQQPFQRTLSRLYEMNSNEYLFHSKYQEVYE
CCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]