Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 189183339

GI number: 189183339

Start: 451126

End: 452052

Strand: Direct

Name: secF [H]

Synonym: OTT_0432

Alternate gene names: 189183339

Gene position: 451126-452052 (Clockwise)

Preceding gene: 189183338

Following gene: 189183341

Centisome position: 22.46

GC content: 28.91

Gene sequence:

>927_bases
ATGCCGATTTTACCACTAGAACTAATACTTAGTAAGTTAAACATTGACTTTGTTAGACTAAGAAAGCTAAATTATATAGT
TTCAATTCTACTAGTTATATTTAGTATAGCTAGTCTATTAATTTTTAAGCTTAACCTTAGCACTAGCTTTATTGGTGGAA
TAAATTTAGAGATTAAAATATCTCCTTTACAGCAACTAGGCTCAATTCGATCAGCTTTAAATAATGCAGATCTTGGAAAA
TTATCTATACATAATTTTGGAGCTGAAGATGTTTTCTCAATTAAAATAGCAAACAAATCTCAAGATAATAATAGTATTGG
CTTAATAACTAACAAAGTAAAAAGCATTCTAGAAACACAACTTAATTGTAAAGTTACGTTAAGAAAAACTAGTTTTATTG
GACCACAGGTAAGTAGCTATTTAGTTAAGTCTAGTATTAAAGCTTTAGCTCTAGCTCTTGTTGGAATCGCTATATATGTA
TGGATTCGTTTTAAATGGCAATTTGGTGTAGGTATATTAGTTGCAATTATGCATGATGCTATATTGTCTCTAGGATTTAT
GAGTATTAGTGGCCTTGAATTTGATTTAAGTAGTGTCGCAGCTTTACTGACAGTTATTGGTTATTCAGTAAATGATTCAG
TTATTATATATGATCGTATTAGGGAAAATATGAATAAAAACAATAGTTCTAGTAAACCTATCGAAGATATAATCAATATC
AGTATTAGTGCAACATTATCCAGAACTATATTAACTGTATTTACAACTTTGTTAGCAAACTTAGCACTAATATTATTTGG
CGGAGCTGCTATTAAAAGTTTCAGTATTCTTGTATTTATTGGTATTATAGTTGGAACTTACTCATCAATATTTGTTTCAG
CGCCAATACTAATGCTGTTTAATATTCAACATCAAAAAAAGCGGTAG

Upstream 100 bases:

>100_bases
AGAAGATGAAAAAATGATATGACCTATAATGTTGACTTAAATTAATATTAATTGATAAAGAGTATTACCAACAGACAATA
TAAAATATTTTGGAGTTAAA

Downstream 100 bases:

>100_bases
TTAATATACACGAGTTCAATATAATTGAGAAAGCGTAAGTAAAGCAAAGAAAGAGAAAGATAATTTAAACTTGGAAAAGA
AACAGAAATTTTGTTATGCT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MPILPLELILSKLNIDFVRLRKLNYIVSILLVIFSIASLLIFKLNLSTSFIGGINLEIKISPLQQLGSIRSALNNADLGK
LSIHNFGAEDVFSIKIANKSQDNNSIGLITNKVKSILETQLNCKVTLRKTSFIGPQVSSYLVKSSIKALALALVGIAIYV
WIRFKWQFGVGILVAIMHDAILSLGFMSISGLEFDLSSVAALLTVIGYSVNDSVIIYDRIRENMNKNNSSSKPIEDIINI
SISATLSRTILTVFTTLLANLALILFGGAAIKSFSILVFIGIIVGTYSSIFVSAPILMLFNIQHQKKR

Sequences:

>Translated_308_residues
MPILPLELILSKLNIDFVRLRKLNYIVSILLVIFSIASLLIFKLNLSTSFIGGINLEIKISPLQQLGSIRSALNNADLGK
LSIHNFGAEDVFSIKIANKSQDNNSIGLITNKVKSILETQLNCKVTLRKTSFIGPQVSSYLVKSSIKALALALVGIAIYV
WIRFKWQFGVGILVAIMHDAILSLGFMSISGLEFDLSSVAALLTVIGYSVNDSVIIYDRIRENMNKNNSSSKPIEDIINI
SISATLSRTILTVFTTLLANLALILFGGAAIKSFSILVFIGIIVGTYSSIFVSAPILMLFNIQHQKKR
>Mature_307_residues
PILPLELILSKLNIDFVRLRKLNYIVSILLVIFSIASLLIFKLNLSTSFIGGINLEIKISPLQQLGSIRSALNNADLGKL
SIHNFGAEDVFSIKIANKSQDNNSIGLITNKVKSILETQLNCKVTLRKTSFIGPQVSSYLVKSSIKALALALVGIAIYVW
IRFKWQFGVGILVAIMHDAILSLGFMSISGLEFDLSSVAALLTVIGYSVNDSVIIYDRIRENMNKNNSSSKPIEDIINIS
ISATLSRTILTVFTTLLANLALILFGGAAIKSFSILVFIGIIVGTYSSIFVSAPILMLFNIQHQKKR

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=291, Percent_Identity=32.9896907216495, Blast_Score=177, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 33749; Mature: 33617

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50156 SSD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPILPLELILSKLNIDFVRLRKLNYIVSILLVIFSIASLLIFKLNLSTSFIGGINLEIKI
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEEEEE
SPLQQLGSIRSALNNADLGKLSIHNFGAEDVFSIKIANKSQDNNSIGLITNKVKSILETQ
CCHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCEEHHHHHHHHHHHHC
LNCKVTLRKTSFIGPQVSSYLVKSSIKALALALVGIAIYVWIRFKWQFGVGILVAIMHDA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHH
ILSLGFMSISGLEFDLSSVAALLTVIGYSVNDSVIIYDRIRENMNKNNSSSKPIEDIINI
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHHCC
SISATLSRTILTVFTTLLANLALILFGGAAIKSFSILVFIGIIVGTYSSIFVSAPILMLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
NIQHQKKR
ECHHHCCC
>Mature Secondary Structure 
PILPLELILSKLNIDFVRLRKLNYIVSILLVIFSIASLLIFKLNLSTSFIGGINLEIKI
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEEEEE
SPLQQLGSIRSALNNADLGKLSIHNFGAEDVFSIKIANKSQDNNSIGLITNKVKSILETQ
CCHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCEEHHHHHHHHHHHHC
LNCKVTLRKTSFIGPQVSSYLVKSSIKALALALVGIAIYVWIRFKWQFGVGILVAIMHDA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHH
ILSLGFMSISGLEFDLSSVAALLTVIGYSVNDSVIIYDRIRENMNKNNSSSKPIEDIINI
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHHCC
SISATLSRTILTVFTTLLANLALILFGGAAIKSFSILVFIGIIVGTYSSIFVSAPILMLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
NIQHQKKR
ECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA