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The map label for this gene is traA [H]

Identifier: 189183303

GI number: 189183303

Start: 415271

End: 415981

Strand: Direct

Name: traA [H]

Synonym: OTT_0396

Alternate gene names: 189183303

Gene position: 415271-415981 (Clockwise)

Preceding gene: 189183302

Following gene: 189183304

Centisome position: 20.67

GC content: 33.19

Gene sequence:

>711_bases
ATGCAAGGCAGCTTAATAGTAGTAGATGAAGCTGGAATGGTAGGTACTAAAGCTTATGCAGAGCTGTTTAGAGTAGTTAG
AAACAATAATTGTCAACTGATACTTGCTGGAGATGAAAAGCAGTTAGCTTCAATAGAAAGAGGTGGAATGTTTGAGATGC
TGAGTAATATTTTTGGTTCACATGTTTTAGTAAATATTCGAAGACAAAGTAAAAACTGGAGCAGAGAAGCAGCAACAAAG
TTTGCTGAGAGTAATATTTTAAGCTGTATAACCTTACTGAGGCAAAATAAATGCGTTAGGTTTGATAATACGTTGCAGGA
CTCAATGAGTAAATTAATATACAACTGGAGTCTAAGCAAATTTAAACCACATGAAAAATTGGTAATTACAGTACGTAATA
AAGATGTCGACATTCTTAATTCAAGTATTAGGTCTTTGTTAAAAGCAAATGGTACGCTAAAAGGCACAGAATATGAGCGT
TCTATTGATGGAAGGAAAAAGTCATATATGGCAGGAGATAGAATCGTATTTCAAAAAAGCTATAAGGATTTACAAATACA
AAACAGTGAATTTGCAACTTTAACTTCGGTTAGTAAAAATAAATTTATAGCTAAGACAGACACAGGAAAAGAAGTGAGTT
TTGATTCGGTAAAATACAATTTAAACATGGCTATGCAAGTACTGTTTATAAGGTCCAGGGAGCTTCTATAA

Upstream 100 bases:

>100_bases
GTCTTGCTCCTACTCATAAGGCAGTATCAGAGCTGAGGAGCAAAGGTTATACAGAGGTCTATACAGTAAAAGGATTTTTG
TATAATCGAAAAAAAATTTT

Downstream 100 bases:

>100_bases
AAGATGTATACGTTTTGCATAACGGAGTAAGTAATATAAGCAGCTCATACGTAGCTATGACAAGGCATATAAAGAGCTTA
AAGTTATATTGCAATAATGA

Product: putative conjugative transfer protein TraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MQGSLIVVDEAGMVGTKAYAELFRVVRNNNCQLILAGDEKQLASIERGGMFEMLSNIFGSHVLVNIRRQSKNWSREAATK
FAESNILSCITLLRQNKCVRFDNTLQDSMSKLIYNWSLSKFKPHEKLVITVRNKDVDILNSSIRSLLKANGTLKGTEYER
SIDGRKKSYMAGDRIVFQKSYKDLQIQNSEFATLTSVSKNKFIAKTDTGKEVSFDSVKYNLNMAMQVLFIRSRELL

Sequences:

>Translated_236_residues
MQGSLIVVDEAGMVGTKAYAELFRVVRNNNCQLILAGDEKQLASIERGGMFEMLSNIFGSHVLVNIRRQSKNWSREAATK
FAESNILSCITLLRQNKCVRFDNTLQDSMSKLIYNWSLSKFKPHEKLVITVRNKDVDILNSSIRSLLKANGTLKGTEYER
SIDGRKKSYMAGDRIVFQKSYKDLQIQNSEFATLTSVSKNKFIAKTDTGKEVSFDSVKYNLNMAMQVLFIRSRELL
>Mature_236_residues
MQGSLIVVDEAGMVGTKAYAELFRVVRNNNCQLILAGDEKQLASIERGGMFEMLSNIFGSHVLVNIRRQSKNWSREAATK
FAESNILSCITLLRQNKCVRFDNTLQDSMSKLIYNWSLSKFKPHEKLVITVRNKDVDILNSSIRSLLKANGTLKGTEYER
SIDGRKKSYMAGDRIVFQKSYKDLQIQNSEFATLTSVSKNKFIAKTDTGKEVSFDSVKYNLNMAMQVLFIRSRELL

Specific function: Unknown

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mobA/mobL family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000606
- InterPro:   IPR005053
- InterPro:   IPR014136 [H]

Pfam domain/function: PF03389 MobA_MobL; PF01443 Viral_helicase1 [H]

EC number: NA

Molecular weight: Translated: 26842; Mature: 26842

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGSLIVVDEAGMVGTKAYAELFRVVRNNNCQLILAGDEKQLASIERGGMFEMLSNIFGS
CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCHHHHHHHHCCC
HVLVNIRRQSKNWSREAATKFAESNILSCITLLRQNKCVRFDNTLQDSMSKLIYNWSLSK
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCC
FKPHEKLVITVRNKDVDILNSSIRSLLKANGTLKGTEYERSIDGRKKSYMAGDRIVFQKS
CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHCCCCEEEEECC
YKDLQIQNSEFATLTSVSKNKFIAKTDTGKEVSFDSVKYNLNMAMQVLFIRSRELL
CCCEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQGSLIVVDEAGMVGTKAYAELFRVVRNNNCQLILAGDEKQLASIERGGMFEMLSNIFGS
CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCHHHHHHHHCCC
HVLVNIRRQSKNWSREAATKFAESNILSCITLLRQNKCVRFDNTLQDSMSKLIYNWSLSK
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCC
FKPHEKLVITVRNKDVDILNSSIRSLLKANGTLKGTEYERSIDGRKKSYMAGDRIVFQKS
CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHCCCCEEEEECC
YKDLQIQNSEFATLTSVSKNKFIAKTDTGKEVSFDSVKYNLNMAMQVLFIRSRELL
CCCEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]