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The map label for this gene is abcT1 [C]

Identifier: 189183286

GI number: 189183286

Start: 392119

End: 393786

Strand: Direct

Name: abcT1 [C]

Synonym: OTT_0379

Alternate gene names: 189183286

Gene position: 392119-393786 (Clockwise)

Preceding gene: 189183285

Following gene: 189183287

Centisome position: 19.52

GC content: 33.69

Gene sequence:

>1668_bases
ATGTCCTATCAGTATGTTTATGTAATGAAAGGATTAAGTAAGGTAATTAATGGAAAGCCAATCTTAAAAGAAACCTGGCT
GTCATTTATTCCTGGTGCAAAGATTGGTATAATAGGTCCAAATGGTGCTGGAAAGTCTACACTGTTAAAAATTATGGCAG
GACTTGATAAAGAATTTGATGGTGAAGCTTGGGCAGCTAATGGACTTAAAATTGGCTATTTAGCTCAAGAACCACCATTA
GATTTAAATAAAAATGTTGGAGAAAATATTTCAGATGGTTTAAAAGAAAAAACAGATCTATTGAATCAATTTACTAGTAT
TAGCTCTAAATTTGCTGAAGAGATGACAGATGATGAAATGTCAGATTTGCTAGCAAAACAAGCTGAATTACAAGAAAAGA
TTGATGCTATTGATGCATGGAATTTGGATCGTGAAATTGATATTGCTATGGAAGCATTAAGATGTCCTAGTAAAGATGCT
AAAATCGATCAAATTTCTGGTGGAGAGAAGCGTAGGGTAGCATTATGTAAGTTGTTGTTGGAAAAGCCTGACATATTATT
ACTCGATGAGCCAACTAACCATCTTGACGCTGAATCAGTTTCATGGCTTGAAAACTATTTAAAAGCATATAAAGGTACAG
TTGTATCTATTACTCATGATCGGTACTTTCTTGATAATGTAGCACAGTGGATATTAGAAATAGATCGAGGAGTTTGTGTG
CCATGGCAATCCAATTATTCTCAATGGCTTGATCTTAAAGAAAAAAAACTTGCTACTGAGGAAAAAGAAGAAAGCAATAT
AAGAAAGTATCTTAAAAAAGAATTAGAGTGGATAAATCAATCTCCTAAAGCTAGACAATCTAAAAGTAAAGCCAGAATTA
CAGCCTATAATGATCTAGTTAATCAACAAAATGAAAAAAAAGTTGGTCCTGCGCAAATTATTATTCCAAATGGACCACGC
CTTGGAGATTTAGTTATTGAAGGAAATAATATATCTAAAAGTTTTAATTCTCGAGTCTTGCTACAAGATTTTAGCTTTAA
AATCCCGCCAGGAGCAATTGTTGGTATAATAGGACCAAACGGAGCTGGTAAATCAACTCTATTAAATATGATTGTTGGTA
AGGATACAGCTGATAGTGGTACTATTAAAATAGGTTCAACAGTTAAGTTAGGTTACGTTGATCAATCTAGAGATCACCTA
GATGATAACAAAACAGTATGGGAGGAGATTTCAGGCGGTTTGGATGAGATGCAGCTGGGTAATATAATTGTTAAGAGTAG
AGCATATTGTGCTGCATTTAACTTTCGAGGTAGTGATCAACAAAAAAAAGTAGGTCAGTTATCTGGTGGAGAACGTAATA
GAGTACATCTGGCTAAATTACTCAGATGGGGGGCTAATGTTATTCTTCTTGACGAACCATCTAATGATTTAGATGTTGAA
ACTTTAAGGGCGCTGGAAGAAGCTATTTTGGACTTTGCTGGCTGCGTTATAGTAGTAACACATGATAGGTGGTTTTTAGA
TAGAATTGCAACTCATATTATTGCATTTGATCAATCCAGTAATGCAACCTGGTTTGAAGGTAATTATCAAGATTATCACA
ATTATATGACTAAAATTTGTGGTCATGACACTAAAAATCCTAAATATAAACATAAAAAATTTGTATAA

Upstream 100 bases:

>100_bases
ACTAAAAATAATCATATTGCCATTTATAGCAATATGATTATTTTTAGTTATAATATAGCGATAACATAATTATAAAAATT
TAAATAAATAAAAGGTAATA

Downstream 100 bases:

>100_bases
GTTAAATTTTAATATATTAATTTTGGCATAAAATGGGATTATCTTTGGGCGAGATTATTGTTGTTGTTATAATTGCAATA
TTGGTTGCAAAGCCTCATGA

Product: putative ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 554

Protein sequence:

>555_residues
MSYQYVYVMKGLSKVINGKPILKETWLSFIPGAKIGIIGPNGAGKSTLLKIMAGLDKEFDGEAWAANGLKIGYLAQEPPL
DLNKNVGENISDGLKEKTDLLNQFTSISSKFAEEMTDDEMSDLLAKQAELQEKIDAIDAWNLDREIDIAMEALRCPSKDA
KIDQISGGEKRRVALCKLLLEKPDILLLDEPTNHLDAESVSWLENYLKAYKGTVVSITHDRYFLDNVAQWILEIDRGVCV
PWQSNYSQWLDLKEKKLATEEKEESNIRKYLKKELEWINQSPKARQSKSKARITAYNDLVNQQNEKKVGPAQIIIPNGPR
LGDLVIEGNNISKSFNSRVLLQDFSFKIPPGAIVGIIGPNGAGKSTLLNMIVGKDTADSGTIKIGSTVKLGYVDQSRDHL
DDNKTVWEEISGGLDEMQLGNIIVKSRAYCAAFNFRGSDQQKKVGQLSGGERNRVHLAKLLRWGANVILLDEPSNDLDVE
TLRALEEAILDFAGCVIVVTHDRWFLDRIATHIIAFDQSSNATWFEGNYQDYHNYMTKICGHDTKNPKYKHKKFV

Sequences:

>Translated_555_residues
MSYQYVYVMKGLSKVINGKPILKETWLSFIPGAKIGIIGPNGAGKSTLLKIMAGLDKEFDGEAWAANGLKIGYLAQEPPL
DLNKNVGENISDGLKEKTDLLNQFTSISSKFAEEMTDDEMSDLLAKQAELQEKIDAIDAWNLDREIDIAMEALRCPSKDA
KIDQISGGEKRRVALCKLLLEKPDILLLDEPTNHLDAESVSWLENYLKAYKGTVVSITHDRYFLDNVAQWILEIDRGVCV
PWQSNYSQWLDLKEKKLATEEKEESNIRKYLKKELEWINQSPKARQSKSKARITAYNDLVNQQNEKKVGPAQIIIPNGPR
LGDLVIEGNNISKSFNSRVLLQDFSFKIPPGAIVGIIGPNGAGKSTLLNMIVGKDTADSGTIKIGSTVKLGYVDQSRDHL
DDNKTVWEEISGGLDEMQLGNIIVKSRAYCAAFNFRGSDQQKKVGQLSGGERNRVHLAKLLRWGANVILLDEPSNDLDVE
TLRALEEAILDFAGCVIVVTHDRWFLDRIATHIIAFDQSSNATWFEGNYQDYHNYMTKICGHDTKNPKYKHKKFV
>Mature_554_residues
SYQYVYVMKGLSKVINGKPILKETWLSFIPGAKIGIIGPNGAGKSTLLKIMAGLDKEFDGEAWAANGLKIGYLAQEPPLD
LNKNVGENISDGLKEKTDLLNQFTSISSKFAEEMTDDEMSDLLAKQAELQEKIDAIDAWNLDREIDIAMEALRCPSKDAK
IDQISGGEKRRVALCKLLLEKPDILLLDEPTNHLDAESVSWLENYLKAYKGTVVSITHDRYFLDNVAQWILEIDRGVCVP
WQSNYSQWLDLKEKKLATEEKEESNIRKYLKKELEWINQSPKARQSKSKARITAYNDLVNQQNEKKVGPAQIIIPNGPRL
GDLVIEGNNISKSFNSRVLLQDFSFKIPPGAIVGIIGPNGAGKSTLLNMIVGKDTADSGTIKIGSTVKLGYVDQSRDHLD
DNKTVWEEISGGLDEMQLGNIIVKSRAYCAAFNFRGSDQQKKVGQLSGGERNRVHLAKLLRWGANVILLDEPSNDLDVET
LRALEEAILDFAGCVIVVTHDRWFLDRIATHIIAFDQSSNATWFEGNYQDYHNYMTKICGHDTKNPKYKHKKFV

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=513, Percent_Identity=25.5360623781676, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI27881506, Length=529, Percent_Identity=28.7334593572779, Blast_Score=169, Evalue=7e-42,
Organism=Homo sapiens, GI10947137, Length=529, Percent_Identity=28.7334593572779, Blast_Score=169, Evalue=7e-42,
Organism=Homo sapiens, GI69354671, Length=554, Percent_Identity=26.8953068592058, Blast_Score=152, Evalue=6e-37,
Organism=Homo sapiens, GI10947135, Length=554, Percent_Identity=26.8953068592058, Blast_Score=152, Evalue=6e-37,
Organism=Homo sapiens, GI171184400, Length=204, Percent_Identity=27.4509803921569, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI2367384, Length=554, Percent_Identity=55.4151624548736, Blast_Score=628, Evalue=0.0,
Organism=Escherichia coli, GI1787182, Length=517, Percent_Identity=35.3965183752418, Blast_Score=315, Evalue=5e-87,
Organism=Escherichia coli, GI1789751, Length=526, Percent_Identity=29.467680608365, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI1787041, Length=535, Percent_Identity=29.1588785046729, Blast_Score=211, Evalue=9e-56,
Organism=Escherichia coli, GI48994943, Length=471, Percent_Identity=22.5053078556263, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788165, Length=192, Percent_Identity=34.8958333333333, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=32.1266968325792, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=30.3571428571429, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081709, Length=192, Percent_Identity=28.6458333333333, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=26.5217391304348, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1790467, Length=207, Percent_Identity=31.4009661835749, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081791, Length=194, Percent_Identity=29.8969072164948, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787164, Length=184, Percent_Identity=28.804347826087, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786253, Length=185, Percent_Identity=31.8918918918919, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1789593, Length=198, Percent_Identity=29.2929292929293, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786563, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789891, Length=255, Percent_Identity=24.7058823529412, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081782, Length=200, Percent_Identity=28, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788450, Length=211, Percent_Identity=27.4881516587678, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786872, Length=207, Percent_Identity=27.536231884058, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1788472, Length=204, Percent_Identity=27.4509803921569, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=546, Percent_Identity=27.4725274725275, Blast_Score=203, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17555318, Length=552, Percent_Identity=26.9927536231884, Blast_Score=177, Evalue=1e-44,
Organism=Caenorhabditis elegans, GI17553372, Length=537, Percent_Identity=26.6294227188082, Blast_Score=163, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI17511077, Length=234, Percent_Identity=28.6324786324786, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=215, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17533971, Length=216, Percent_Identity=26.8518518518519, Blast_Score=66, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=553, Percent_Identity=30.7414104882459, Blast_Score=201, Evalue=3e-52,
Organism=Saccharomyces cerevisiae, GI6321121, Length=566, Percent_Identity=26.8551236749117, Blast_Score=177, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6323278, Length=397, Percent_Identity=28.2115869017632, Blast_Score=123, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6324314, Length=398, Percent_Identity=25.3768844221106, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6325030, Length=396, Percent_Identity=26.2626262626263, Blast_Score=104, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6320266, Length=371, Percent_Identity=23.7196765498652, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641342, Length=543, Percent_Identity=30.0184162062615, Blast_Score=196, Evalue=4e-50,
Organism=Drosophila melanogaster, GI24666836, Length=514, Percent_Identity=28.7937743190661, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI24642252, Length=551, Percent_Identity=29.038112522686, Blast_Score=189, Evalue=5e-48,
Organism=Drosophila melanogaster, GI18859989, Length=551, Percent_Identity=29.038112522686, Blast_Score=189, Evalue=5e-48,
Organism=Drosophila melanogaster, GI24653245, Length=239, Percent_Identity=28.8702928870293, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI281363262, Length=239, Percent_Identity=28.8702928870293, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI85726357, Length=212, Percent_Identity=31.1320754716981, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648279, Length=186, Percent_Identity=31.1827956989247, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161078426, Length=176, Percent_Identity=31.25, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022374
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 62223; Mature: 62091

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYQYVYVMKGLSKVINGKPILKETWLSFIPGAKIGIIGPNGAGKSTLLKIMAGLDKEFD
CCCEEEHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCC
GEAWAANGLKIGYLAQEPPLDLNKNVGENISDGLKEKTDLLNQFTSISSKFAEEMTDDEM
CCEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
SDLLAKQAELQEKIDAIDAWNLDREIDIAMEALRCPSKDAKIDQISGGEKRRVALCKLLL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
EKPDILLLDEPTNHLDAESVSWLENYLKAYKGTVVSITHDRYFLDNVAQWILEIDRGVCV
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEC
PWQSNYSQWLDLKEKKLATEEKEESNIRKYLKKELEWINQSPKARQSKSKARITAYNDLV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEHHHHHH
NQQNEKKVGPAQIIIPNGPRLGDLVIEGNNISKSFNSRVLLQDFSFKIPPGAIVGIIGPN
CCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECCC
GAGKSTLLNMIVGKDTADSGTIKIGSTVKLGYVDQSRDHLDDNKTVWEEISGGLDEMQLG
CCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCHHHCCCCHHHHHHHCCCCCHHHHC
NIIVKSRAYCAAFNFRGSDQQKKVGQLSGGERNRVHLAKLLRWGANVILLDEPSNDLDVE
CEEEECCCEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
TLRALEEAILDFAGCVIVVTHDRWFLDRIATHIIAFDQSSNATWFEGNYQDYHNYMTKIC
HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEEECCCCCEEEECCHHHHHHHHHHHH
GHDTKNPKYKHKKFV
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
SYQYVYVMKGLSKVINGKPILKETWLSFIPGAKIGIIGPNGAGKSTLLKIMAGLDKEFD
CCEEEHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCC
GEAWAANGLKIGYLAQEPPLDLNKNVGENISDGLKEKTDLLNQFTSISSKFAEEMTDDEM
CCEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
SDLLAKQAELQEKIDAIDAWNLDREIDIAMEALRCPSKDAKIDQISGGEKRRVALCKLLL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
EKPDILLLDEPTNHLDAESVSWLENYLKAYKGTVVSITHDRYFLDNVAQWILEIDRGVCV
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEC
PWQSNYSQWLDLKEKKLATEEKEESNIRKYLKKELEWINQSPKARQSKSKARITAYNDLV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEHHHHHH
NQQNEKKVGPAQIIIPNGPRLGDLVIEGNNISKSFNSRVLLQDFSFKIPPGAIVGIIGPN
CCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECCC
GAGKSTLLNMIVGKDTADSGTIKIGSTVKLGYVDQSRDHLDDNKTVWEEISGGLDEMQLG
CCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCHHHCCCCHHHHHHHCCCCCHHHHC
NIIVKSRAYCAAFNFRGSDQQKKVGQLSGGERNRVHLAKLLRWGANVILLDEPSNDLDVE
CEEEECCCEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
TLRALEEAILDFAGCVIVVTHDRWFLDRIATHIIAFDQSSNATWFEGNYQDYHNYMTKIC
HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEEECCCCCEEEECCHHHHHHHHHHHH
GHDTKNPKYKHKKFV
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]