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The map label for this gene is recR

Identifier: 189026227

GI number: 189026227

Start: 1093998

End: 1094603

Strand: Reverse

Name: recR

Synonym: TPASS_1004

Alternate gene names: 189026227

Gene position: 1094603-1093998 (Counterclockwise)

Preceding gene: 189026228

Following gene: 189026225

Centisome position: 96.06

GC content: 55.94

Gene sequence:

>606_bases
ATGATACCGGCGATTGAAGAAGTAGTGGAGCATTTATCTCGTCTCCCGGGTATTGGAGTAAAGCTGGCGACGCGCCTTGC
CTATCACCTTTTGAAACGTGACCCCGCTGAAGCGCAGGTTCTTGCGCGCGGGATTGCGTGTTTGCATGAGCGCGTATATC
GGTGTGTGTGCTGCGGTGCTTTCTGTGAGGGGAGGACCTGCGCGTTGTGCACGGATGCGTCTCGGGACCGAGGCATCATT
TGTGTAGTGGAGCGTGCGCAGGACGTGGAAATGATGGCGGGTGTGGGGGAGTATCGGGGTTTATTCCACGTGTTAGGAGG
AGTCATTGCACCGCTTGAGGGGGTCGGTCCTGACCAGCTCCGTATTGCGGCGTTGCTGAAACGGTTGCAAGAGAGTTCAG
TACGGGAAGTTATTCTGGCGTTGAATCCCACCGTGGAAGGGGATACCACCGCCTTGTATGTGCAAAAAATCCTTGCAAAC
TTTCCGGTAATAGTAACGCGTCTAGCGTCTGGTATCCCCGTAGGGGGGGACTTAGAATATATCGACCGAACGACATTGGC
GCACAGCCTGCGTGGGCGCCGGCCACTTGATTGCTCGGAGGCTTAG

Upstream 100 bases:

>100_bases
GCAGGGGCTGTGCGTACTCCGTATTGAGTAGCGACAGACGGGTAGGAAGAGTGCGAAAGCTGTCAGTTCAATATGGGGAT
TTTGTACCAGGGGATGTGTG

Downstream 100 bases:

>100_bases
AGCATGATCTCTACCGCAGTGACTACTGCCATATGTGTACCCGGTGGACGCTGCGGATAAAGAACACGCTTGCGGTGTTC
AGCAAGAAGAGTCCAACGAT

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MIPAIEEVVEHLSRLPGIGVKLATRLAYHLLKRDPAEAQVLARGIACLHERVYRCVCCGAFCEGRTCALCTDASRDRGII
CVVERAQDVEMMAGVGEYRGLFHVLGGVIAPLEGVGPDQLRIAALLKRLQESSVREVILALNPTVEGDTTALYVQKILAN
FPVIVTRLASGIPVGGDLEYIDRTTLAHSLRGRRPLDCSEA

Sequences:

>Translated_201_residues
MIPAIEEVVEHLSRLPGIGVKLATRLAYHLLKRDPAEAQVLARGIACLHERVYRCVCCGAFCEGRTCALCTDASRDRGII
CVVERAQDVEMMAGVGEYRGLFHVLGGVIAPLEGVGPDQLRIAALLKRLQESSVREVILALNPTVEGDTTALYVQKILAN
FPVIVTRLASGIPVGGDLEYIDRTTLAHSLRGRRPLDCSEA
>Mature_201_residues
MIPAIEEVVEHLSRLPGIGVKLATRLAYHLLKRDPAEAQVLARGIACLHERVYRCVCCGAFCEGRTCALCTDASRDRGII
CVVERAQDVEMMAGVGEYRGLFHVLGGVIAPLEGVGPDQLRIAALLKRLQESSVREVILALNPTVEGDTTALYVQKILAN
FPVIVTRLASGIPVGGDLEYIDRTTLAHSLRGRRPLDCSEA

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain

Homologues:

Organism=Escherichia coli, GI1786678, Length=195, Percent_Identity=41.025641025641, Blast_Score=156, Evalue=7e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECR_TREPA (O83969)

Other databases:

- EMBL:   AE000520
- PIR:   F71254
- RefSeq:   NP_219441.1
- ProteinModelPortal:   O83969
- SMR:   O83969
- IntAct:   O83969
- GeneID:   2610795
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP1004
- NMPDR:   fig|243276.1.peg.999
- TIGR:   TP_1004
- HOGENOM:   HBG571744
- OMA:   HGAISPM
- ProtClustDB:   PRK00076
- BioCyc:   TPAL243276:TP_1004-MONOMER
- HAMAP:   MF_00017
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967
- SMART:   SM00493
- TIGRFAMs:   TIGR00615

Pfam domain/function: PF02132 RecR; PF01751 Toprim; SSF111304 RecR

EC number: NA

Molecular weight: Translated: 21801; Mature: 21801

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPAIEEVVEHLSRLPGIGVKLATRLAYHLLKRDPAEAQVLARGIACLHERVYRCVCCGA
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FCEGRTCALCTDASRDRGIICVVERAQDVEMMAGVGEYRGLFHVLGGVIAPLEGVGPDQL
HCCCCEEEEECCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH
RIAALLKRLQESSVREVILALNPTVEGDTTALYVQKILANFPVIVTRLASGIPVGGDLEY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHH
IDRTTLAHSLRGRRPLDCSEA
HHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MIPAIEEVVEHLSRLPGIGVKLATRLAYHLLKRDPAEAQVLARGIACLHERVYRCVCCGA
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FCEGRTCALCTDASRDRGIICVVERAQDVEMMAGVGEYRGLFHVLGGVIAPLEGVGPDQL
HCCCCEEEEECCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH
RIAALLKRLQESSVREVILALNPTVEGDTTALYVQKILANFPVIVTRLASGIPVGGDLEY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHH
IDRTTLAHSLRGRRPLDCSEA
HHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876