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The map label for this gene is tpd

Identifier: 189026194

GI number: 189026194

Start: 1055578

End: 1056192

Strand: Reverse

Name: tpd

Synonym: TPASS_0971

Alternate gene names: 189026194

Gene position: 1056192-1055578 (Counterclockwise)

Preceding gene: 189026195

Following gene: 189026193

Centisome position: 92.69

GC content: 55.12

Gene sequence:

>615_bases
ATGAAGAGGGTGAGTTTGCTCGGGAGCGCAGCCATTTTTGCGTTGGTTTTTTCCGCGTGCGGGGGCGGTGGAGAGCATCA
GCACGGTGAGGAGATGATGGCCGCCGTTCCTGCTCCAGATGCAGAGGGGGCGGCCGGTTTTGATGAGTTTCCTATAGGCG
AGGATCGGGATGTGGGGCCCTTGCATGTGGGAGGGGTGTATTTTCAGCCGGTTGAGATGCATCCGGCTCCAGGAGCACAG
CCGTCGAAGGAAGAGGCGGACTGTCACATAGAAGCGGATATCCACGCAAATGAGGCGGGTAAAGATTTAGGGTATGGAGT
CGGGGATTTTGTGCCGTATCTCCGAGTTGTTGCTTTCCTCCAGAAGCATGGCTCTGAGAAGGTGCAAAAGGTGATGTTTG
CGCCCATGAACGCAGGGGACGGTCCGCATTATGGGGCGAACGTGAAGTTTGAAGAGGGGCTTGGTACGTACAAGGTACGT
TTCGAGATCGCTGCACCCTCGCATGATGAGTACTCGCTACATATTGATGAGCAAACTGGGGTTTCCGGAAGGTTCTGGAG
CGAGCCATTAGTTGCAGAGTGGGATGATTTTGAATGGAAGGGGCCTCAGTGGTAG

Upstream 100 bases:

>100_bases
GATTTCCATTTGTTTTTCTATAATGGTGAGGAAAAGAAGCGCTGGACGGGAGAAGGCGTTTTGAAAAGGAGGGGCGCGTG
ACGCCCCAGGGGAGTGAAGA

Downstream 100 bases:

>100_bases
GGACGTTCAGAAGGTCCGAGGGTGCGCGCGCATAAGGGCGTTCTTTGTTCAGTAAGACAGGCGGGTAGTGCAGTGCGTGG
CGCTGCTCGCCGGGTCCGTT

Product: membrane antigen, pathogen-specific

Products: NA

Alternate protein names: Pathogen-specific membrane antigen

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MKRVSLLGSAAIFALVFSACGGGGEHQHGEEMMAAVPAPDAEGAAGFDEFPIGEDRDVGPLHVGGVYFQPVEMHPAPGAQ
PSKEEADCHIEADIHANEAGKDLGYGVGDFVPYLRVVAFLQKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVR
FEIAAPSHDEYSLHIDEQTGVSGRFWSEPLVAEWDDFEWKGPQW

Sequences:

>Translated_204_residues
MKRVSLLGSAAIFALVFSACGGGGEHQHGEEMMAAVPAPDAEGAAGFDEFPIGEDRDVGPLHVGGVYFQPVEMHPAPGAQ
PSKEEADCHIEADIHANEAGKDLGYGVGDFVPYLRVVAFLQKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVR
FEIAAPSHDEYSLHIDEQTGVSGRFWSEPLVAEWDDFEWKGPQW
>Mature_204_residues
MKRVSLLGSAAIFALVFSACGGGGEHQHGEEMMAAVPAPDAEGAAGFDEFPIGEDRDVGPLHVGGVYFQPVEMHPAPGAQ
PSKEEADCHIEADIHANEAGKDLGYGVGDFVPYLRVVAFLQKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVR
FEIAAPSHDEYSLHIDEQTGVSGRFWSEPLVAEWDDFEWKGPQW

Specific function: This antigen is a pathogen-specific membrane immunogen

COG id: COG3470

COG function: function code P; Uncharacterized protein probably involved in high-affinity Fe2+ transport

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0423 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TA34_TREPA (P19478)

Other databases:

- EMBL:   J04241
- EMBL:   AE000520
- PIR:   A40182
- RefSeq:   NP_219408.1
- PDB:   2O6C
- PDB:   2O6D
- PDB:   2O6E
- PDB:   2O6F
- PDBsum:   2O6C
- PDBsum:   2O6D
- PDBsum:   2O6E
- PDBsum:   2O6F
- ProteinModelPortal:   P19478
- SMR:   P19478
- IntAct:   P19478
- GeneID:   2611572
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0971
- NMPDR:   fig|243276.1.peg.966
- TIGR:   TP_0971
- HOGENOM:   HBG297121
- OMA:   HIEPPSK
- ProtClustDB:   CLSK552904
- BioCyc:   TPAL243276:TP_0971-MONOMER
- InterPro:   IPR018470

Pfam domain/function: PF10634 Iron_transport

EC number: NA

Molecular weight: Translated: 22085; Mature: 22085

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVSLLGSAAIFALVFSACGGGGEHQHGEEMMAAVPAPDAEGAAGFDEFPIGEDRDVGP
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCC
LHVGGVYFQPVEMHPAPGAQPSKEEADCHIEADIHANEAGKDLGYGVGDFVPYLRVVAFL
EEECCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
QKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVRFEIAAPSHDEYSLHIDEQTG
HHCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCCCCEEEEECCCCC
VSGRFWSEPLVAEWDDFEWKGPQW
CCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRVSLLGSAAIFALVFSACGGGGEHQHGEEMMAAVPAPDAEGAAGFDEFPIGEDRDVGP
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCC
LHVGGVYFQPVEMHPAPGAQPSKEEADCHIEADIHANEAGKDLGYGVGDFVPYLRVVAFL
EEECCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
QKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVRFEIAAPSHDEYSLHIDEQTG
HHCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCCCCEEEEECCCCC
VSGRFWSEPLVAEWDDFEWKGPQW
CCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2680970; 9665876; 1894360