Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
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Accession | NC_010741 |
Length | 1,139,457 |
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The map label for this gene is 189026192
Identifier: 189026192
GI number: 189026192
Start: 1053824
End: 1055443
Strand: Reverse
Name: 189026192
Synonym: TPASS_0969
Alternate gene names: NA
Gene position: 1055443-1053824 (Counterclockwise)
Preceding gene: 189026193
Following gene: 189026191
Centisome position: 92.63
GC content: 57.41
Gene sequence:
>1620_bases TTGAAAGTTCTCCTGCGCGTTCTTCTGTCTCCGTGGGGTTGTGCGGTGTACAGAACGGGGGGGGGTGTCGTGAGTGCGGG TATGAAAGTCTTGGTGTACGCGGTGGCGCTGGGGTTCGGGTGCGGGGGTGTGGTGCACATGCGGGAGGGGGACACCTACC AACAACTCCTCGAGCACCGCATTGCAAATGGTCGGGAGTTTTCGCGGGTGTTTGCGCAGGCACAGGTTGACGAAGCTGAG CACAATGAAGTTCGGACAAAGACGGCGGGAAGTGTGCAAATTGGCACGGGAGACGTGCTCTTCAACAAGAAGAATGGCAA TGGTGCTAACGGCTACAAGGTGGAGATGGCGCCGCATTTGAGTATTGCGTCCCCCTTTATAGGAAATTCTCGGCTGAATC TTGTTGCCCCCCGCAAGCTTGACGGTGTCACAAGTACCTCCACCGTGTCGGTGGATTACACTACCGATTTTTACTCCTCC GTTCGTCCAACATACCTGAACTCCCTCAAGGAAAAGACATATCAGAAGGAGAAGAGCGGTTCGGCGCTGCGTGATGGGCG CAGGCTAGTGGAACGGGAGTTTTTGCAGGAAGTACAGCGTCTGTACGGTAGTTACGCGGACCAGGTGCGCGCAAGTTTGG AGTTGGTGCGCGCGCGGTTGCGTTTTGAGTCAGTAAAGAGACAGGGATATCAAGAGGATTCGGCGTATTTTCAGAGCGCA CAGCTTGCACAGGTGCGGGCGGAACGCGCCCGGGCACAGGCCAGGCAGCGCTTTGACCTTGAGTACACGCGGTTTGCAGC GCGCAACGGGGTGGCCTACGAGGACGATGAGCGCGACGGTTTTTTACACGATTTGGCGGTTGCAGTGCCGCTTGAGCCGG CGATGGCGGTGACTCAGTGCGCAGGGGAGCGGGGGCGCGAGTATTGTGATGCGCAGGACCGCTGCGAGCGCGTCATTGCC CAGCGAGGTACAGATTACTCCCCCTTTCGCACAAGCGCGCGCGTGTACTTTACCGATGGGGAAGAAAACAAGCAATTAAC TAACGGCATGGCGCCAGCTGCTCCTAGCACTACGAGCACGTATGGGGGCACGTTCAACATGGCGTTTCCCGGCGGGGATT CCAGTTTTACCGTGCAGAATAGTAAAGGGCTGGCGGGGATCCTAGCGAATTTTGAGTGGAGCCCGATACGCACGCGCTAT CGCTCGCTGGACTACACGGCAGAGCGCGCAGAGCGTGTCTTTGACGAAGTTGAGCTTCAGGCAAAGGGTGATCGGTCGAA TAAGTTGTTCGGTGCTATAGACGCGCAGGGGGACTCAGTGCTGGTGCTGCGCGGGGTGGATTTGCAGACACTGGATAACG CGCGCAAGAAGGCACGGTTGCAGAAAGAACGCTTGGAACGTGGTATCATCGGAAGGCTGGAGTACGAGGCAGCGCGTTCG GAGTATCTTCTGGCGCTTGCTTCTGTGGCAGAGGCAAAGGCGCGGGCGATTATTTTTAACACCGACCTTGCGTGTGCCTA CGGGGTGGGTGCGGACGCCGCCGCCGCTCAGTTGACCCAAGAGGAAATGGTGGTCTCTGAGAAAAAGGATGCTGAAGAAA AGAAAGAGAGGTCTTCGTGA
Upstream 100 bases:
>100_bases AGGGCGTTCTTTGTTCAGTAAGACAGGCGGGTAGTGCAGTGCGTGGCGCTGCTCGCCGGGTCCGTTTTGAGGGTGTGGGT TTTGACACGCAGTTATTTTT
Downstream 100 bases:
>100_bases GCGTAAGTTATCGTGGCCCGAGGTGGTCTTCGTTCGTCCACGTGTCGCAGCATTCGTGTAGGTTCGTAGCTCCTACGTGC GCTGAGGGTGCTCAGGGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 539; Mature: 539
Protein sequence:
>539_residues MKVLLRVLLSPWGCAVYRTGGGVVSAGMKVLVYAVALGFGCGGVVHMREGDTYQQLLEHRIANGREFSRVFAQAQVDEAE HNEVRTKTAGSVQIGTGDVLFNKKNGNGANGYKVEMAPHLSIASPFIGNSRLNLVAPRKLDGVTSTSTVSVDYTTDFYSS VRPTYLNSLKEKTYQKEKSGSALRDGRRLVEREFLQEVQRLYGSYADQVRASLELVRARLRFESVKRQGYQEDSAYFQSA QLAQVRAERARAQARQRFDLEYTRFAARNGVAYEDDERDGFLHDLAVAVPLEPAMAVTQCAGERGREYCDAQDRCERVIA QRGTDYSPFRTSARVYFTDGEENKQLTNGMAPAAPSTTSTYGGTFNMAFPGGDSSFTVQNSKGLAGILANFEWSPIRTRY RSLDYTAERAERVFDEVELQAKGDRSNKLFGAIDAQGDSVLVLRGVDLQTLDNARKKARLQKERLERGIIGRLEYEAARS EYLLALASVAEAKARAIIFNTDLACAYGVGADAAAAQLTQEEMVVSEKKDAEEKKERSS
Sequences:
>Translated_539_residues MKVLLRVLLSPWGCAVYRTGGGVVSAGMKVLVYAVALGFGCGGVVHMREGDTYQQLLEHRIANGREFSRVFAQAQVDEAE HNEVRTKTAGSVQIGTGDVLFNKKNGNGANGYKVEMAPHLSIASPFIGNSRLNLVAPRKLDGVTSTSTVSVDYTTDFYSS VRPTYLNSLKEKTYQKEKSGSALRDGRRLVEREFLQEVQRLYGSYADQVRASLELVRARLRFESVKRQGYQEDSAYFQSA QLAQVRAERARAQARQRFDLEYTRFAARNGVAYEDDERDGFLHDLAVAVPLEPAMAVTQCAGERGREYCDAQDRCERVIA QRGTDYSPFRTSARVYFTDGEENKQLTNGMAPAAPSTTSTYGGTFNMAFPGGDSSFTVQNSKGLAGILANFEWSPIRTRY RSLDYTAERAERVFDEVELQAKGDRSNKLFGAIDAQGDSVLVLRGVDLQTLDNARKKARLQKERLERGIIGRLEYEAARS EYLLALASVAEAKARAIIFNTDLACAYGVGADAAAAQLTQEEMVVSEKKDAEEKKERSS >Mature_539_residues MKVLLRVLLSPWGCAVYRTGGGVVSAGMKVLVYAVALGFGCGGVVHMREGDTYQQLLEHRIANGREFSRVFAQAQVDEAE HNEVRTKTAGSVQIGTGDVLFNKKNGNGANGYKVEMAPHLSIASPFIGNSRLNLVAPRKLDGVTSTSTVSVDYTTDFYSS VRPTYLNSLKEKTYQKEKSGSALRDGRRLVEREFLQEVQRLYGSYADQVRASLELVRARLRFESVKRQGYQEDSAYFQSA QLAQVRAERARAQARQRFDLEYTRFAARNGVAYEDDERDGFLHDLAVAVPLEPAMAVTQCAGERGREYCDAQDRCERVIA QRGTDYSPFRTSARVYFTDGEENKQLTNGMAPAAPSTTSTYGGTFNMAFPGGDSSFTVQNSKGLAGILANFEWSPIRTRY RSLDYTAERAERVFDEVELQAKGDRSNKLFGAIDAQGDSVLVLRGVDLQTLDNARKKARLQKERLERGIIGRLEYEAARS EYLLALASVAEAKARAIIFNTDLACAYGVGADAAAAQLTQEEMVVSEKKDAEEKKERSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TP096X family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y969_TREPA (O83935)
Other databases:
- EMBL: AE000520 - PIR: D71260 - RefSeq: NP_219406.1 - ProteinModelPortal: O83935 - IntAct: O83935 - GeneID: 2611561 - GenomeReviews: AE000520_GR - KEGG: tpa:TP0969 - NMPDR: fig|243276.1.peg.964 - TIGR: TP_0969 - HOGENOM: HBG732181 - ProtClustDB: CLSK218949 - BioCyc: TPAL243276:TP_0969-MONOMER
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59652; Mature: 59652
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: PS00589 PTS_HPR_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVLLRVLLSPWGCAVYRTGGGVVSAGMKVLVYAVALGFGCGGVVHMREGDTYQQLLEHR CHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH IANGREFSRVFAQAQVDEAEHNEVRTKTAGSVQIGTGDVLFNKKNGNGANGYKVEMAPHL HCCCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCEEEEECCCCCCCCCEEEEECCCC SIASPFIGNSRLNLVAPRKLDGVTSTSTVSVDYTTDFYSSVRPTYLNSLKEKTYQKEKSG EECCCCCCCCCEEEECCCCCCCCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHCC SALRDGRRLVEREFLQEVQRLYGSYADQVRASLELVRARLRFESVKRQGYQEDSAYFQSA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH QLAQVRAERARAQARQRFDLEYTRFAARNGVAYEDDERDGFLHDLAVAVPLEPAMAVTQC HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHEECCCCHHHHHHHH AGERGREYCDAQDRCERVIAQRGTDYSPFRTSARVYFTDGEENKQLTNGMAPAAPSTTST HHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCC YGGTFNMAFPGGDSSFTVQNSKGLAGILANFEWSPIRTRYRSLDYTAERAERVFDEVELQ CCCEEEEEECCCCCCEEEECCCCCEEHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHE AKGDRSNKLFGAIDAQGDSVLVLRGVDLQTLDNARKKARLQKERLERGIIGRLEYEAARS ECCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH EYLLALASVAEAKARAIIFNTDLACAYGVGADAAAAQLTQEEMVVSEKKDAEEKKERSS HHHHHHHHHHHHHCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKVLLRVLLSPWGCAVYRTGGGVVSAGMKVLVYAVALGFGCGGVVHMREGDTYQQLLEHR CHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH IANGREFSRVFAQAQVDEAEHNEVRTKTAGSVQIGTGDVLFNKKNGNGANGYKVEMAPHL HCCCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCEEEEECCCCCCCCCEEEEECCCC SIASPFIGNSRLNLVAPRKLDGVTSTSTVSVDYTTDFYSSVRPTYLNSLKEKTYQKEKSG EECCCCCCCCCEEEECCCCCCCCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHCC SALRDGRRLVEREFLQEVQRLYGSYADQVRASLELVRARLRFESVKRQGYQEDSAYFQSA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH QLAQVRAERARAQARQRFDLEYTRFAARNGVAYEDDERDGFLHDLAVAVPLEPAMAVTQC HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHEECCCCHHHHHHHH AGERGREYCDAQDRCERVIAQRGTDYSPFRTSARVYFTDGEENKQLTNGMAPAAPSTTST HHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCC YGGTFNMAFPGGDSSFTVQNSKGLAGILANFEWSPIRTRYRSLDYTAERAERVFDEVELQ CCCEEEEEECCCCCCEEEECCCCCEEHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHE AKGDRSNKLFGAIDAQGDSVLVLRGVDLQTLDNARKKARLQKERLERGIIGRLEYEAARS ECCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH EYLLALASVAEAKARAIIFNTDLACAYGVGADAAAAQLTQEEMVVSEKKDAEEKKERSS HHHHHHHHHHHHHCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9665876