Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
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Accession | NC_010741 |
Length | 1,139,457 |
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The map label for this gene is 189026189
Identifier: 189026189
GI number: 189026189
Start: 1048974
End: 1050608
Strand: Reverse
Name: 189026189
Synonym: TPASS_0966
Alternate gene names: NA
Gene position: 1050608-1048974 (Counterclockwise)
Preceding gene: 189026190
Following gene: 189026188
Centisome position: 92.2
GC content: 58.72
Gene sequence:
>1635_bases GTGATCGCACGCAGGATGCTTTGCGCGCGCCCGTGGGGGCCGTCGTGCGTGGTGTGCGCTCTGTGTGGGGCGCTTGCCGC CTTGGTGCCAGCAGTCGGTGCGCAGGAACAGGCAGTGCCTGCGCCGGGGACGCCGGCTCCTCCCGCACACACGGCTTCAG AAGCGGTGCCTCCTGCGCCAGAGCCCCGTGCGGAAGGGGAGCAGCCGTCTCCTCTTGTCCCCACGGCTCTGCCGGTCCCT GGAGGGGCAGTGGCTGCACGCGCAGCGCCCGGCACAGTCGGTCCGCGGCTGTGGGAGCAGCTGCTGCAGTGGCGCGTGCA GCACGGTGACGAACACCAGGTGCCGCAAATGGCCTACGAAATTGCCGCGAACAATTACGACATTGCGTTGGTAAAGTCCA TCGTGGATCTGAGGATGGGGACTGGACACATACACCACAACCTGAATGGGAACGGGGCCGGGGGTATGGCAAACGGTACG CCGACGCTTTCTCCCTACGTGCATCTTTTTTTTCCGACCTATCAGAATTTGAGTTTAAAAGCGGATATTGCGATCAAGAT CAACACCCCTTCGGCAGACGTGACCGCGCTCTTTGGTATGGATCTGTACTCCAAGGTGCGGCGGCAGCATCAGCTGCAGG TGCGGCGTGCGCGCAATAGCATGCTTGACGCGTTTGCGGCGCACCTGCGGGGGCAGCACGCTGCGCGGGAAGCGTTCCTG GCTGAGCTCGATGAGCTGCTAAGCGCATACAGCACGCTGCTTGAAGCACAGGTAACCGAGCAGGAGTGCACGCGCCTAGT GCGCACGATGCGCATACAGCGCTACCAAGCGCATTCGGTAAAGTTGCGCTCCGCAACGCTCAAGCACGCACGCGCAGAGA GAGTTGCCCGTCGTGCGCGCAAGACGTTCACCGCCCTGTATCAGGATTTTGTGCGCAAGTGCGGGGCCTTTGAAGGAAAT GATCCGGAAACATTCATGCTCCATCTTGCGCAGGTAGTTCCGCAGGAGCCCGTATCTTCTACCGCACTGCTTTCAGTGGA AAATGACTGGGAGTTTCTTAAGAACAGGGAAGATTTGGAAACTCAGGCTGAAGCGCGTGCAGTGGATGCTATCTCGTACG GGTTTAATGTGGAGTCTGGGGTGGGGTCTGAGGGTAAGTCATTGAAGAGAATATTGGCAAATGTCAGAATGGACTTTCCC GGCGGTGGCTTTTGGCTTGGATTGAACTTACCGTACCGGCAGTGGTCCCGTGTGGAGGTAAAATTTCGGCTCACGTGGGA CCCGCTTTCCATTAAGTATCAGGAGCTTTCACGGCAGACACTGCAGCTTCATGAGCGGCTCAGTGCGCTTAAGCTTCAAG ACGCGTACGAAGCTTCTGAGCGTAAGGTGCTTGGCCTGCGCCACACCGCCGAGTCGCTCGGCTGGGAACAAGAGGCGGCA CTCACCGAACTGAATATTCTCAGGCGGAGTGCGCAAACGCACCAGAAGTGGCTGGAAAGAGGAGCTATCGGCGCGCATCA GCACGCCCGGGCCCAGCACGCGTACCTACAGGCGCTCATCACGTTGGCCAAGATCAACATTAAAATACTAAAGTTTAACC TTGAAACTGCGTCTTCGTTCAGACCAGTACTCTAA
Upstream 100 bases:
>100_bases ATTTTTAACATCGACGCGCGCGTAGATTTTCTTTCTTCTGGAACCCAAACATGAACATGGGGAGTCTGGTATCTTATGCT GCAATCCAACGGGGGGTAAG
Downstream 100 bases:
>100_bases AGAATACCCCAAGAAGGAAGTTGTATGACCACAGCACAGAAACTCCTACACAGAAAATCGACCATCGCCATGGTGGTCGG AATTCTCGCCTTCTTATTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 544; Mature: 544
Protein sequence:
>544_residues MIARRMLCARPWGPSCVVCALCGALAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAPEPRAEGEQPSPLVPTALPVP GGAVAARAAPGTVGPRLWEQLLQWRVQHGDEHQVPQMAYEIAANNYDIALVKSIVDLRMGTGHIHHNLNGNGAGGMANGT PTLSPYVHLFFPTYQNLSLKADIAIKINTPSADVTALFGMDLYSKVRRQHQLQVRRARNSMLDAFAAHLRGQHAAREAFL AELDELLSAYSTLLEAQVTEQECTRLVRTMRIQRYQAHSVKLRSATLKHARAERVARRARKTFTALYQDFVRKCGAFEGN DPETFMLHLAQVVPQEPVSSTALLSVENDWEFLKNREDLETQAEARAVDAISYGFNVESGVGSEGKSLKRILANVRMDFP GGGFWLGLNLPYRQWSRVEVKFRLTWDPLSIKYQELSRQTLQLHERLSALKLQDAYEASERKVLGLRHTAESLGWEQEAA LTELNILRRSAQTHQKWLERGAIGAHQHARAQHAYLQALITLAKINIKILKFNLETASSFRPVL
Sequences:
>Translated_544_residues MIARRMLCARPWGPSCVVCALCGALAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAPEPRAEGEQPSPLVPTALPVP GGAVAARAAPGTVGPRLWEQLLQWRVQHGDEHQVPQMAYEIAANNYDIALVKSIVDLRMGTGHIHHNLNGNGAGGMANGT PTLSPYVHLFFPTYQNLSLKADIAIKINTPSADVTALFGMDLYSKVRRQHQLQVRRARNSMLDAFAAHLRGQHAAREAFL AELDELLSAYSTLLEAQVTEQECTRLVRTMRIQRYQAHSVKLRSATLKHARAERVARRARKTFTALYQDFVRKCGAFEGN DPETFMLHLAQVVPQEPVSSTALLSVENDWEFLKNREDLETQAEARAVDAISYGFNVESGVGSEGKSLKRILANVRMDFP GGGFWLGLNLPYRQWSRVEVKFRLTWDPLSIKYQELSRQTLQLHERLSALKLQDAYEASERKVLGLRHTAESLGWEQEAA LTELNILRRSAQTHQKWLERGAIGAHQHARAQHAYLQALITLAKINIKILKFNLETASSFRPVL >Mature_544_residues MIARRMLCARPWGPSCVVCALCGALAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAPEPRAEGEQPSPLVPTALPVP GGAVAARAAPGTVGPRLWEQLLQWRVQHGDEHQVPQMAYEIAANNYDIALVKSIVDLRMGTGHIHHNLNGNGAGGMANGT PTLSPYVHLFFPTYQNLSLKADIAIKINTPSADVTALFGMDLYSKVRRQHQLQVRRARNSMLDAFAAHLRGQHAAREAFL AELDELLSAYSTLLEAQVTEQECTRLVRTMRIQRYQAHSVKLRSATLKHARAERVARRARKTFTALYQDFVRKCGAFEGN DPETFMLHLAQVVPQEPVSSTALLSVENDWEFLKNREDLETQAEARAVDAISYGFNVESGVGSEGKSLKRILANVRMDFP GGGFWLGLNLPYRQWSRVEVKFRLTWDPLSIKYQELSRQTLQLHERLSALKLQDAYEASERKVLGLRHTAESLGWEQEAA LTELNILRRSAQTHQKWLERGAIGAHQHARAQHAYLQALITLAKINIKILKFNLETASSFRPVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TP096X family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60248; Mature: 60248
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIARRMLCARPWGPSCVVCALCGALAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAP CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EPRAEGEQPSPLVPTALPVPGGAVAARAAPGTVGPRLWEQLLQWRVQHGDEHQVPQMAYE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH IAANNYDIALVKSIVDLRMGTGHIHHNLNGNGAGGMANGTPTLSPYVHLFFPTYQNLSLK HHCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEE ADIAIKINTPSADVTALFGMDLYSKVRRQHQLQVRRARNSMLDAFAAHLRGQHAAREAFL EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH AELDELLSAYSTLLEAQVTEQECTRLVRTMRIQRYQAHSVKLRSATLKHARAERVARRAR HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTFTALYQDFVRKCGAFEGNDPETFMLHLAQVVPQEPVSSTALLSVENDWEFLKNREDLE HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCHHHH TQAEARAVDAISYGFNVESGVGSEGKSLKRILANVRMDFPGGGFWLGLNLPYRQWSRVEV HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCEECCCCCCEEEECCCCCCCCCEEEE KFRLTWDPLSIKYQELSRQTLQLHERLSALKLQDAYEASERKVLGLRHTAESLGWEQEAA EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH LTELNILRRSAQTHQKWLERGAIGAHQHARAQHAYLQALITLAKINIKILKFNLETASSF HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCC RPVL CCCC >Mature Secondary Structure MIARRMLCARPWGPSCVVCALCGALAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAP CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EPRAEGEQPSPLVPTALPVPGGAVAARAAPGTVGPRLWEQLLQWRVQHGDEHQVPQMAYE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH IAANNYDIALVKSIVDLRMGTGHIHHNLNGNGAGGMANGTPTLSPYVHLFFPTYQNLSLK HHCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEE ADIAIKINTPSADVTALFGMDLYSKVRRQHQLQVRRARNSMLDAFAAHLRGQHAAREAFL EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH AELDELLSAYSTLLEAQVTEQECTRLVRTMRIQRYQAHSVKLRSATLKHARAERVARRAR HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTFTALYQDFVRKCGAFEGNDPETFMLHLAQVVPQEPVSSTALLSVENDWEFLKNREDLE HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCHHHH TQAEARAVDAISYGFNVESGVGSEGKSLKRILANVRMDFPGGGFWLGLNLPYRQWSRVEV HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCEECCCCCCEEEECCCCCCCCCEEEE KFRLTWDPLSIKYQELSRQTLQLHERLSALKLQDAYEASERKVLGLRHTAESLGWEQEAA EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH LTELNILRRSAQTHQKWLERGAIGAHQHARAQHAYLQALITLAKINIKILKFNLETASSF HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCC RPVL CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]