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The map label for this gene is yggB [C]

Identifier: 189026046

GI number: 189026046

Start: 891225

End: 892130

Strand: Reverse

Name: yggB [C]

Synonym: TPASS_0822

Alternate gene names: 189026046

Gene position: 892130-891225 (Counterclockwise)

Preceding gene: 189026047

Following gene: 189026045

Centisome position: 78.29

GC content: 55.3

Gene sequence:

>906_bases
GTGGTGTCGAGGCGTGCACAAGCGGGGAATATGCGAGAATTGGAGCATTTCGTGCAGTCTCTTGCTACGGCTGCTTGCGC
GCTGGGCGCGGGCCTCACGCAGGTTGCGACGTCAGAGCGCGTGTGGTATCTCCTGCGCTTCGTTGCCGTGCTGTGCATCA
CCTCTGCCTTCTTTCGAATGCTGAGGCGCGGTGTGCGCCGTGTTGTTGCAAGGCGGTTATCCGCGCAGACGCAGCATTTT
GTGTTCAAAACACTAAACTATCTCTCGTTCACGGTGATGACGTTTACCGCCTTTCACTGGTTGGGGATCAACGTGAGCGC
GCTGCTAGGGGCCGCGGGGATAGCGGGAGTAGCGCTTGGATTTGCGGCGCAAACGTCGGTTTCAAACGTCATATCAGGGC
TGTTTGTCATGACCGAACGTGCTTTTCGAATTCAAGACGTGATAGAAATTGACGGTATCGTCGGTGCAGTGCAGTCAATT
AATTTGCTTTCGGTGGCGCTCAAAACGCTCGATGGGCAGTATGTGCGCGTGCCCAACGAAACGATCCTCAAAGCGAACCT
TGTTAACTATTCGCACTGTCCTCATCGCCGAGTGAAAACGGAAGTTTCCGTGGCGTATGGAAGTGACCTGCGCCGGGTGC
AACAGCTCTTGCTAGATGTTGCGACACGTAACCGGTTTGTGCTTTCGGATCCTGCGCCGGCGGTTTTGTGGAATGCCTTC
GCTGACTCGGGTATTGACGTAACGCTCCTGACCTGGACTCACATTGAGCATTTCAATGATTTGCGCAATGCTATCTTCGT
GGATATCGACGAATGCTTCAAACAGGCGGGCATTGAGGTTCCCTTTCCGCATGTGGACGTACGGGTGCAGGGGGCGTGCG
ATGCGCCACGTGCGGAAACGGTGTGA

Upstream 100 bases:

>100_bases
GTCAGGTAAGTAGGGGTGTAGTGCTCTCCTGTTTTTAGGAAGGGGAGCAGGAGATTGGGGGCATATTTGCGCGCAGTACG
CCCTTGCGTAGGATGCAGGC

Downstream 100 bases:

>100_bases
AATGCAGGGTGAGTCTTGATGTGCGCTTTTTCTTTGGACATTGACAGGATGGATAGAGGGACAGGGGGAGGCCGAATGAG
ATGAAAGGAAAAACGGTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MVSRRAQAGNMRELEHFVQSLATAACALGAGLTQVATSERVWYLLRFVAVLCITSAFFRMLRRGVRRVVARRLSAQTQHF
VFKTLNYLSFTVMTFTAFHWLGINVSALLGAAGIAGVALGFAAQTSVSNVISGLFVMTERAFRIQDVIEIDGIVGAVQSI
NLLSVALKTLDGQYVRVPNETILKANLVNYSHCPHRRVKTEVSVAYGSDLRRVQQLLLDVATRNRFVLSDPAPAVLWNAF
ADSGIDVTLLTWTHIEHFNDLRNAIFVDIDECFKQAGIEVPFPHVDVRVQGACDAPRAETV

Sequences:

>Translated_301_residues
MVSRRAQAGNMRELEHFVQSLATAACALGAGLTQVATSERVWYLLRFVAVLCITSAFFRMLRRGVRRVVARRLSAQTQHF
VFKTLNYLSFTVMTFTAFHWLGINVSALLGAAGIAGVALGFAAQTSVSNVISGLFVMTERAFRIQDVIEIDGIVGAVQSI
NLLSVALKTLDGQYVRVPNETILKANLVNYSHCPHRRVKTEVSVAYGSDLRRVQQLLLDVATRNRFVLSDPAPAVLWNAF
ADSGIDVTLLTWTHIEHFNDLRNAIFVDIDECFKQAGIEVPFPHVDVRVQGACDAPRAETV
>Mature_301_residues
MVSRRAQAGNMRELEHFVQSLATAACALGAGLTQVATSERVWYLLRFVAVLCITSAFFRMLRRGVRRVVARRLSAQTQHF
VFKTLNYLSFTVMTFTAFHWLGINVSALLGAAGIAGVALGFAAQTSVSNVISGLFVMTERAFRIQDVIEIDGIVGAVQSI
NLLSVALKTLDGQYVRVPNETILKANLVNYSHCPHRRVKTEVSVAYGSDLRRVQQLLLDVATRNRFVLSDPAPAVLWNAF
ADSGIDVTLLTWTHIEHFNDLRNAIFVDIDECFKQAGIEVPFPHVDVRVQGACDAPRAETV

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=243, Percent_Identity=27.9835390946502, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1786670, Length=211, Percent_Identity=29.8578199052133, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI2367355, Length=221, Percent_Identity=28.5067873303167, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 33250; Mature: 33250

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSRRAQAGNMRELEHFVQSLATAACALGAGLTQVATSERVWYLLRFVAVLCITSAFFRM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRGVRRVVARRLSAQTQHFVFKTLNYLSFTVMTFTAFHWLGINVSALLGAAGIAGVALG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FAAQTSVSNVISGLFVMTERAFRIQDVIEIDGIVGAVQSINLLSVALKTLDGQYVRVPNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCH
TILKANLVNYSHCPHRRVKTEVSVAYGSDLRRVQQLLLDVATRNRFVLSDPAPAVLWNAF
HHHEECCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHH
ADSGIDVTLLTWTHIEHFNDLRNAIFVDIDECFKQAGIEVPFPHVDVRVQGACDAPRAET
HCCCCEEEEEEHHHHHHHHHHHHHEEEEHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCC
V
C
>Mature Secondary Structure
MVSRRAQAGNMRELEHFVQSLATAACALGAGLTQVATSERVWYLLRFVAVLCITSAFFRM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRGVRRVVARRLSAQTQHFVFKTLNYLSFTVMTFTAFHWLGINVSALLGAAGIAGVALG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FAAQTSVSNVISGLFVMTERAFRIQDVIEIDGIVGAVQSINLLSVALKTLDGQYVRVPNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCH
TILKANLVNYSHCPHRRVKTEVSVAYGSDLRRVQQLLLDVATRNRFVLSDPAPAVLWNAF
HHHEECCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHH
ADSGIDVTLLTWTHIEHFNDLRNAIFVDIDECFKQAGIEVPFPHVDVRVQGACDAPRAET
HCCCCEEEEEEHHHHHHHHHHHHHEEEEHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]