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The map label for this gene is rnb [C]

Identifier: 189026030

GI number: 189026030

Start: 874930

End: 877209

Strand: Reverse

Name: rnb [C]

Synonym: TPASS_0805

Alternate gene names: 189026030

Gene position: 877209-874930 (Counterclockwise)

Preceding gene: 189026031

Following gene: 189026026

Centisome position: 76.98

GC content: 55.62

Gene sequence:

>2280_bases
GTGATGGAACTACATGTGGGGAGTCCGGTGCTCTATCGAAAGCGCCCTGCGTGTGTACACGCTATCGAGCGAGGGAAGGA
TGCGAAGATCACCATTGAAACCGAACACGGGTTAAGACGCGTGCGCGTGAAAGACGTTTTGCTCTTGCACCCGGGCACTG
TTTCTTCCCTGGTAGAACTATTGTCTGCGTCTCACATTGCGCGTATAAGCGAGGAATCCGTACAGGACGCGCGCGAGTTT
TTCGGTACCGAAGCTCCTTCCTTTTTTGAACTTGCAGAGCTCCTCTGGGGGGCTTCTGCCGCGCAGTCGTGGGCCTATTG
GGAGCAAAGTGTGCAAAGTGCGTATTTTGTTTGCAATGAGCCTGCCGCCGCAGTGCGCATCCGCTCTCAGCAAGAGTGCG
CATCCTGCGCAGTGCAGGAAGAAAAAAAGGAAGCGCGTCAGGCGTTAAAGCAGGCGTTCATCCAGGAGCTACGGCGCGTC
GCACGAAGTGCACGCAATATGGCACCAACTGCGCAGGAAGGAATGCATCGTGTGCACGTGTCGCAGGTGAACGAGCAGTT
TACGCCCTTTCTGCAGGAAATCGAAGCGTTCGCGTTGGGGCACGCGAATCGCTGTAAGATTTTGCAGTGTGCCTTAGGCT
GCGAGCACAGGGAGCAAGCGCATGAAATACTCTTGCACTTCGGGTTCTGGCCGGTGTATCGCAATCCGTATCCTGATCGT
CTGTGTCCTCTATTTTTAAGTCCTGCTCATGTGTCTGGTTCTGATGGAGAACGTGCGGCGCAGCAAGATGTGCACACACA
TAGGTGTGTCACTCAAGCACGCACAGATTGTACGCATCTTGCCGCGTATGCCATCGATGGGGAGGGTACGCGCGACCCTG
ACGATGCGATCAGTTTCGATGGTACGTATTTTTGGATCCATGTAGCGAGCCCTGCAGAGCTCGTTCTTCCTGATTCGCAC
GCAGATGCATGCGCACGTACACGGGGTCGTTCGCTCTATTTGCCTGAAGGCGCAGTGCGCATGCTCAGCGACGTGGTGGT
TGATACGTGTGCACTCGCGCGCGACGCAGTTTCTCCTGCACTGTCTTTTAAAATTTTACTTGATGAGCACGGTGACATCA
GCTGTGTGCACGTGCTCCGGAGCATGGTGCGTGTTACGCGCCTTTCCTATGCGGAGGCGGATTCCCAGCGCGATACCCCC
GCGTTGCAGCCTCTTTTTGACTTTGCGCGCAACAACATTGCACGGAGAAAAGGGCGCGGCGCAGTGGACATTTGCTTTCC
TGATGTCCACATGAGGGTAGATTTTCCTGTGCAAGAAACAGGGCAAGCGGGAAAGGAAATGAACGCCGGGGACGTGCCCG
ATACACAGGGAAAGGTGCCGCGTGTTCACATTGAAGCACAGCAGTCGTACGAGTCTATGAGCATGGTGCGTGAATTCATG
CTCTTAGCGGGAGAAGCGGCAGCACGGTTTGCCTTTCTACATAACCTTGCCTTTCCTTATGTGAGTCAGGAACGTCCTCA
GCTGCCCGTGCAACTACCAGCGGGATTGGCGGGGGAGTACAAAAAGCGGCGCGCGATGAAAGCTCGTCGCGTGAGCACAA
CCGCCGCGGTGCACGCAGCACTCGGGCTGTCTCAGTACAGTCAGGTGACCAGTCCTTTGCGTCGCTATGTGGATTTGCTT
GCGCATCAACAATTACTGGCGTGTATTGATCACGCGTATGCAAAAGCTCCTGCTGTAGGAAGTGCACAGACAAACGAGAC
GCTTGCGCTCAAGCTTGCGCAGGCAGATGAGGCAGCGCGCCAGGCCACACAAGCAGAGCGTGTATCGCGTCGTCACTGGA
CGCTCGTATACTTTTTGATGCACCCACACACGCGGTACGAAGCGATTGTGTTGGAGCCACTGCAACCGCGTGCRCACGTG
TGGTTACCTGCTGTTGCTCTTGAGGCGGATGTAGCATTAGGTCGGCAGGCGCAGTTCAACGAACGCGTAATGCTCCGTGT
CGTGCGTGTGCGCCTTGCCACGTTAGAAGTACATTTTTCTGTCTGCGAGCACTGTCACCGCGGCGTGACGCAGGCTGTAG
AAGGTGAGGCGGAGCAGCCCTCAKAAGAGGAGTATGTTTTCGGATCTGTGTTATTCCCCTGTGGATATTTCAGGCGGTGC
GTGTACRGTAGCCACTTGGCTGGTTCCTCCCTGCAGGGCGTGCCCGGTTTCTGCGTCAAAGTACAGTGCTTTGGACAAAT
CGAGTGCAAGGGTWAGCAAAGTTCCCTCGTGTGCGGTTAG

Upstream 100 bases:

>100_bases
GGTGGTTCAAGCGTGTTCGACGGATGGTGTGCGCCTGTCTGCAGTCACTCGGTAGACAGCGTACTCAAAACTATTCAGCG
CATACTGCAGGCGCAGGTGC

Downstream 100 bases:

>100_bases
GGTATGATTGCAGCGGGCAACTATCGGTTGTACACCTGCATCGAGATACACAAACGTTTCTGCCCCTAAAGCTTCAACTG
CAAGTACTTTTAGCTGAATG

Product: exoribonuclease II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MMELHVGSPVLYRKRPACVHAIERGKDAKITIETEHGLRRVRVKDVLLLHPGTVSSLVELLSASHIARISEESVQDAREF
FGTEAPSFFELAELLWGASAAQSWAYWEQSVQSAYFVCNEPAAAVRIRSQQECASCAVQEEKKEARQALKQAFIQELRRV
ARSARNMAPTAQEGMHRVHVSQVNEQFTPFLQEIEAFALGHANRCKILQCALGCEHREQAHEILLHFGFWPVYRNPYPDR
LCPLFLSPAHVSGSDGERAAQQDVHTHRCVTQARTDCTHLAAYAIDGEGTRDPDDAISFDGTYFWIHVASPAELVLPDSH
ADACARTRGRSLYLPEGAVRMLSDVVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTRLSYAEADSQRDTP
ALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETGQAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFM
LLAGEAAARFAFLHNLAFPYVSQERPQLPVQLPAGLAGEYKKRRAMKARRVSTTAAVHAALGLSQYSQVTSPLRRYVDLL
AHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAARQATQAERVSRRHWTLVYFLMHPHTRYEAIVLEPLQPRAHV
WLPAVALEADVALGRQAQFNERVMLRVVRVRLATLEVHFSVCEHCHRGVTQAVEGEAEQPSXEEYVFGSVLFPCGYFRRC
VYXSHLAGSSLQGVPGFCVKVQCFGQIECKGXQSSLVCG

Sequences:

>Translated_759_residues
MMELHVGSPVLYRKRPACVHAIERGKDAKITIETEHGLRRVRVKDVLLLHPGTVSSLVELLSASHIARISEESVQDAREF
FGTEAPSFFELAELLWGASAAQSWAYWEQSVQSAYFVCNEPAAAVRIRSQQECASCAVQEEKKEARQALKQAFIQELRRV
ARSARNMAPTAQEGMHRVHVSQVNEQFTPFLQEIEAFALGHANRCKILQCALGCEHREQAHEILLHFGFWPVYRNPYPDR
LCPLFLSPAHVSGSDGERAAQQDVHTHRCVTQARTDCTHLAAYAIDGEGTRDPDDAISFDGTYFWIHVASPAELVLPDSH
ADACARTRGRSLYLPEGAVRMLSDVVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTRLSYAEADSQRDTP
ALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETGQAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFM
LLAGEAAARFAFLHNLAFPYVSQERPQLPVQLPAGLAGEYKKRRAMKARRVSTTAAVHAALGLSQYSQVTSPLRRYVDLL
AHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAARQATQAERVSRRHWTLVYFLMHPHTRYEAIVLEPLQPRAHV
WLPAVALEADVALGRQAQFNERVMLRVVRVRLATLEVHFSVCEHCHRGVTQAVEGEAEQPSXEEYVFGSVLFPCGYFRRC
VYXSHLAGSSLQGVPGFCVKVQCFGQIECKGXQSSLVCG
>Mature_759_residues
MMELHVGSPVLYRKRPACVHAIERGKDAKITIETEHGLRRVRVKDVLLLHPGTVSSLVELLSASHIARISEESVQDAREF
FGTEAPSFFELAELLWGASAAQSWAYWEQSVQSAYFVCNEPAAAVRIRSQQECASCAVQEEKKEARQALKQAFIQELRRV
ARSARNMAPTAQEGMHRVHVSQVNEQFTPFLQEIEAFALGHANRCKILQCALGCEHREQAHEILLHFGFWPVYRNPYPDR
LCPLFLSPAHVSGSDGERAAQQDVHTHRCVTQARTDCTHLAAYAIDGEGTRDPDDAISFDGTYFWIHVASPAELVLPDSH
ADACARTRGRSLYLPEGAVRMLSDVVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTRLSYAEADSQRDTP
ALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETGQAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFM
LLAGEAAARFAFLHNLAFPYVSQERPQLPVQLPAGLAGEYKKRRAMKARRVSTTAAVHAALGLSQYSQVTSPLRRYVDLL
AHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAARQATQAERVSRRHWTLVYFLMHPHTRYEAIVLEPLQPRAHV
WLPAVALEADVALGRQAQFNERVMLRVVRVRLATLEVHFSVCEHCHRGVTQAVEGEAEQPSXEEYVFGSVLFPCGYFRRC
VYXSHLAGSSLQGVPGFCVKVQCFGQIECKGXQSSLVCG

Specific function: 3'-5'Exoribonuclease That Participates In An Essential Cell Function. Acts Nonspecifically On Poly(A), Poly(U) And Ribosomal RNAs. Required For The Expression Of VIrulence Genes In Enteroinvasive Strains Of E.Coli. [C]

COG id: COG0557

COG function: function code K; Exoribonuclease R

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease II (RNB) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001900
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00773 RNB [H]

EC number: 3.1.13.1

Molecular weight: Translated: 84287; Mature: 84287

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMELHVGSPVLYRKRPACVHAIERGKDAKITIETEHGLRRVRVKDVLLLHPGTVSSLVEL
CEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCHHEEEEEEEEECCCCHHHHHHH
LSASHIARISEESVQDAREFFGTEAPSFFELAELLWGASAAQSWAYWEQSVQSAYFVCNE
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEECC
PAAAVRIRSQQECASCAVQEEKKEARQALKQAFIQELRRVARSARNMAPTAQEGMHRVHV
CHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
SQVNEQFTPFLQEIEAFALGHANRCKILQCALGCEHREQAHEILLHFGFWPVYRNPYPDR
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCC
LCPLFLSPAHVSGSDGERAAQQDVHTHRCVTQARTDCTHLAAYAIDGEGTRDPDDAISFD
HHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCCCCEECC
GTYFWIHVASPAELVLPDSHADACARTRGRSLYLPEGAVRMLSDVVVDTCALARDAVSPA
CEEEEEEECCCCEEECCCCCHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCHH
LSFKILLDEHGDISCVHVLRSMVRVTRLSYAEADSQRDTPALQPLFDFARNNIARRKGRG
HEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
AVDICFPDVHMRVDFPVQETGQAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFM
EEEEEECCEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHH
LLAGEAAARFAFLHNLAFPYVSQERPQLPVQLPAGLAGEYKKRRAMKARRVSTTAAVHAA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LGLSQYSQVTSPLRRYVDLLAHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHH
QATQAERVSRRHWTLVYFLMHPHTRYEAIVLEPLQPRAHVWLPAVALEADVALGRQAQFN
HHHHHHHHHHHHEEEEEEEECCCCCEEEEEECCCCCCCCEEECHHHHHHHHHCCCCCCCH
ERVMLRVVRVRLATLEVHFSVCEHCHRGVTQAVEGEAEQPSXEEYVFGSVLFPCGYFRRC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VYXSHLAGSSLQGVPGFCVKVQCFGQIECKGXQSSLVCG
HHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MMELHVGSPVLYRKRPACVHAIERGKDAKITIETEHGLRRVRVKDVLLLHPGTVSSLVEL
CEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCHHEEEEEEEEECCCCHHHHHHH
LSASHIARISEESVQDAREFFGTEAPSFFELAELLWGASAAQSWAYWEQSVQSAYFVCNE
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEECC
PAAAVRIRSQQECASCAVQEEKKEARQALKQAFIQELRRVARSARNMAPTAQEGMHRVHV
CHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
SQVNEQFTPFLQEIEAFALGHANRCKILQCALGCEHREQAHEILLHFGFWPVYRNPYPDR
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCC
LCPLFLSPAHVSGSDGERAAQQDVHTHRCVTQARTDCTHLAAYAIDGEGTRDPDDAISFD
HHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCCCCEECC
GTYFWIHVASPAELVLPDSHADACARTRGRSLYLPEGAVRMLSDVVVDTCALARDAVSPA
CEEEEEEECCCCEEECCCCCHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCHH
LSFKILLDEHGDISCVHVLRSMVRVTRLSYAEADSQRDTPALQPLFDFARNNIARRKGRG
HEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
AVDICFPDVHMRVDFPVQETGQAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFM
EEEEEECCEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHH
LLAGEAAARFAFLHNLAFPYVSQERPQLPVQLPAGLAGEYKKRRAMKARRVSTTAAVHAA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LGLSQYSQVTSPLRRYVDLLAHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHH
QATQAERVSRRHWTLVYFLMHPHTRYEAIVLEPLQPRAHVWLPAVALEADVALGRQAQFN
HHHHHHHHHHHHEEEEEEEECCCCCEEEEEECCCCCCCCEEECHHHHHHHHHCCCCCCCH
ERVMLRVVRVRLATLEVHFSVCEHCHRGVTQAVEGEAEQPSXEEYVFGSVLFPCGYFRRC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VYXSHLAGSSLQGVPGFCVKVQCFGQIECKGXQSSLVCG
HHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]