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The map label for this gene is cph2 [H]

Identifier: 188586587

GI number: 188586587

Start: 2080686

End: 2081708

Strand: Reverse

Name: cph2 [H]

Synonym: Nther_1974

Alternate gene names: 188586587

Gene position: 2081708-2080686 (Counterclockwise)

Preceding gene: 188586590

Following gene: 188586586

Centisome position: 65.76

GC content: 35.19

Gene sequence:

>1023_bases
ATGGGAATTTTAATAGTTGACAATAATAATGATAGCCAATATATGCTAGAAAGATTATTAAATAAAGCCGGATATACTGA
TCTGCATTTCGCGAATTCAGCTAATGAAACTTTCAAGAAACTTGGGATTGACAAGTATGATGGACAAGCTCAAATCAAAT
ATACCGATCTTGATTTAATTCTACTAGATATCATGATGCCTGATATTGATGGTATTGAAGTGTGTAAAAGAATTAATGAT
TCATCTCATGTTTCAGATATTCCTGTAATCATAGTGACTGCACTAAATGATTCGGGTTTTTTGGAAAGGGCATTTCAAGC
TGGTGCTATAGACTTTATCACAAAACCTGTTAAACGCCTAGAACTTTTAGCTAGAGTAGGTTCTGCGATCAAACTAAGCA
AGGAGAAACGGATGCGTATTGTAAGGGAACAAGAATTAGAAAAAACATTGAAGTTATTAGAAGAAACTAATAAAAAATTT
GAAAAACTGGCAACCATAGACGAACTCACTCAATTAGCCAATAGAAGATTATTTGACGAAACCATGCGAGGTGAATGGCG
AAGGGCTAACAGAAATGGTTATAATCTTTCTATAATTCTGCTGGATATTGATTACTTTAAGAATTTTAATGATGCTTATG
GGCATCAAGCGGGAGACGAGTGTTTAAAAGCTATTGCAAAAAAATTAAAATTTTTAATGATGCGTCCTGGTGATTTTGCA
GCTAGATATGGTGGTGAGGAATTTGCTGTAATTCTTCCAGAAACTGATTTAAGGGGGGCTCACAGTGTTGCCGAAAAAAT
CAGGCAAGGGATAGAAGAGTTAAAGATACCTCACTGTGATTCAAAAGTAGCACAATATGTGACAGTTAGTCTAGGTGTGG
CATCTGCGGATTTAAAAAATTGCCAAGGTGGACGTGATCAAGCAACTGATGATGAAATTAAAATCCTGATTGAACATGCG
GATGAAGCTTTATATAAAGCCAAAGATAATGGGAGAAATACAATAGCCCTTATGCAACCTTAA

Upstream 100 bases:

>100_bases
TATAATTAATAAAGGATTTTAATTCCCAAAATAGAAATGTAATTATACAAAATAGCAAGCAAAGTATATATACACATCTA
TAGCAATCGGTGGTGATATT

Downstream 100 bases:

>100_bases
CAAAGCTATAGCTTTAGTTTTTTATAGTGAGCGAACCTCCGGTCTAAAAACTGAGTAGTAAAAGGGAAGACTCCAATAGA
ATCGTCCAAGAAATTGGTAC

Product: response regulator receiver modulated diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MGILIVDNNNDSQYMLERLLNKAGYTDLHFANSANETFKKLGIDKYDGQAQIKYTDLDLILLDIMMPDIDGIEVCKRIND
SSHVSDIPVIIVTALNDSGFLERAFQAGAIDFITKPVKRLELLARVGSAIKLSKEKRMRIVREQELEKTLKLLEETNKKF
EKLATIDELTQLANRRLFDETMRGEWRRANRNGYNLSIILLDIDYFKNFNDAYGHQAGDECLKAIAKKLKFLMMRPGDFA
ARYGGEEFAVILPETDLRGAHSVAEKIRQGIEELKIPHCDSKVAQYVTVSLGVASADLKNCQGGRDQATDDEIKILIEHA
DEALYKAKDNGRNTIALMQP

Sequences:

>Translated_340_residues
MGILIVDNNNDSQYMLERLLNKAGYTDLHFANSANETFKKLGIDKYDGQAQIKYTDLDLILLDIMMPDIDGIEVCKRIND
SSHVSDIPVIIVTALNDSGFLERAFQAGAIDFITKPVKRLELLARVGSAIKLSKEKRMRIVREQELEKTLKLLEETNKKF
EKLATIDELTQLANRRLFDETMRGEWRRANRNGYNLSIILLDIDYFKNFNDAYGHQAGDECLKAIAKKLKFLMMRPGDFA
ARYGGEEFAVILPETDLRGAHSVAEKIRQGIEELKIPHCDSKVAQYVTVSLGVASADLKNCQGGRDQATDDEIKILIEHA
DEALYKAKDNGRNTIALMQP
>Mature_339_residues
GILIVDNNNDSQYMLERLLNKAGYTDLHFANSANETFKKLGIDKYDGQAQIKYTDLDLILLDIMMPDIDGIEVCKRINDS
SHVSDIPVIIVTALNDSGFLERAFQAGAIDFITKPVKRLELLARVGSAIKLSKEKRMRIVREQELEKTLKLLEETNKKFE
KLATIDELTQLANRRLFDETMRGEWRRANRNGYNLSIILLDIDYFKNFNDAYGHQAGDECLKAIAKKLKFLMMRPGDFAA
RYGGEEFAVILPETDLRGAHSVAEKIRQGIEELKIPHCDSKVAQYVTVSLGVASADLKNCQGGRDQATDDEIKILIEHAD
EALYKAKDNGRNTIALMQP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=31.7204301075269, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=34.4827586206897, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787802, Length=176, Percent_Identity=37.5, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=37.2972972972973, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=33.9181286549708, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=37.2093023255814, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788381, Length=189, Percent_Identity=30.1587301587302, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=33.5294117647059, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787541, Length=183, Percent_Identity=28.4153005464481, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=29.608938547486, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787056, Length=173, Percent_Identity=32.3699421965318, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081977, Length=248, Percent_Identity=26.2096774193548, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081974, Length=108, Percent_Identity=29.6296296296296, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 38416; Mature: 38284

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGILIVDNNNDSQYMLERLLNKAGYTDLHFANSANETFKKLGIDKYDGQAQIKYTDLDLI
CEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEECHHHH
LLDIMMPDIDGIEVCKRINDSSHVSDIPVIIVTALNDSGFLERAFQAGAIDFITKPVKRL
HHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHH
ELLARVGSAIKLSKEKRMRIVREQELEKTLKLLEETNKKFEKLATIDELTQLANRRLFDE
HHHHHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMRGEWRRANRNGYNLSIILLDIDYFKNFNDAYGHQAGDECLKAIAKKLKFLMMRPGDFA
HHCCHHHHCCCCCCEEEEEEEEEHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCHH
ARYGGEEFAVILPETDLRGAHSVAEKIRQGIEELKIPHCDSKVAQYVTVSLGVASADLKN
HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
CQGGRDQATDDEIKILIEHADEALYKAKDNGRNTIALMQP
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
>Mature Secondary Structure 
GILIVDNNNDSQYMLERLLNKAGYTDLHFANSANETFKKLGIDKYDGQAQIKYTDLDLI
EEEEEECCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEECHHHH
LLDIMMPDIDGIEVCKRINDSSHVSDIPVIIVTALNDSGFLERAFQAGAIDFITKPVKRL
HHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHH
ELLARVGSAIKLSKEKRMRIVREQELEKTLKLLEETNKKFEKLATIDELTQLANRRLFDE
HHHHHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMRGEWRRANRNGYNLSIILLDIDYFKNFNDAYGHQAGDECLKAIAKKLKFLMMRPGDFA
HHCCHHHHCCCCCCEEEEEEEEEHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCHH
ARYGGEEFAVILPETDLRGAHSVAEKIRQGIEELKIPHCDSKVAQYVTVSLGVASADLKN
HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
CQGGRDQATDDEIKILIEHADEALYKAKDNGRNTIALMQP
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]