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The map label for this gene is ysmB [H]

Identifier: 188586569

GI number: 188586569

Start: 2065777

End: 2066241

Strand: Reverse

Name: ysmB [H]

Synonym: Nther_1956

Alternate gene names: 188586569

Gene position: 2066241-2065777 (Counterclockwise)

Preceding gene: 188586570

Following gene: 188586568

Centisome position: 65.27

GC content: 33.12

Gene sequence:

>465_bases
ATGAAGAATAATTACAGTCAATCAATTCATGACAAGGATTACGATGAATTCATACAGGACATTGAACTTTTAATTAGAAA
TGTGAATTCTGTTATAAAGCGCAGAGGCCGAGAAATACTTCAAGATTTTAATATAACTCCTCCCCAATTTATAGCCCTTC
AATCCCTCACAAAAGAAGGGGACCTTACAATTGGTGAATTAAGTGATCGATTATTTTTAGCCTGTAGTACAGTGACAGAT
TTAGTTGATAGGATGGAAAAAAATGAACTTGTGAAGCGATATAGAGATGATAAAGATCGCAGAATAGTCCGTATTAAAGT
GCTTGAAAAGGGTCATAAATTAATCAGTGAAGTTATAGCTGCAAGACAAGAATACTTAAAGAATATCTTAAAAGATCTCT
CCAAGTCAGAAAGGGAAAGAATAATATTTGCTCTGACCCAGTTGAATGAATTAATGAATCACTAA

Upstream 100 bases:

>100_bases
TTTTGAAAATAACCTACAATTAAAATTTGTAATCCTTGACAGTGAAACTTGTTAACGGTACACTTATTTTAAGTAAAATG
ATATTAGGAGGATTACTCCC

Downstream 100 bases:

>100_bases
ATAATGTGATAATTTACTAAGCTAAAAATCCCATGTTGTCATGGGATTTTTTTAATAGGCGCTGCTATATTTAGTTGTTG
ATACTGTAAAAGCTGATCTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MKNNYSQSIHDKDYDEFIQDIELLIRNVNSVIKRRGREILQDFNITPPQFIALQSLTKEGDLTIGELSDRLFLACSTVTD
LVDRMEKNELVKRYRDDKDRRIVRIKVLEKGHKLISEVIAARQEYLKNILKDLSKSERERIIFALTQLNELMNH

Sequences:

>Translated_154_residues
MKNNYSQSIHDKDYDEFIQDIELLIRNVNSVIKRRGREILQDFNITPPQFIALQSLTKEGDLTIGELSDRLFLACSTVTD
LVDRMEKNELVKRYRDDKDRRIVRIKVLEKGHKLISEVIAARQEYLKNILKDLSKSERERIIFALTQLNELMNH
>Mature_154_residues
MKNNYSQSIHDKDYDEFIQDIELLIRNVNSVIKRRGREILQDFNITPPQFIALQSLTKEGDLTIGELSDRLFLACSTVTD
LVDRMEKNELVKRYRDDKDRRIVRIKVLEKGHKLISEVIAARQEYLKNILKDLSKSERERIIFALTQLNELMNH

Specific function: Negative Regulator Of The Multidrug Operon Emrab. [C]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18188; Mature: 18188

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNYSQSIHDKDYDEFIQDIELLIRNVNSVIKRRGREILQDFNITPPQFIALQSLTKEG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
DLTIGELSDRLFLACSTVTDLVDRMEKNELVKRYRDDKDRRIVRIKVLEKGHKLISEVIA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ARQEYLKNILKDLSKSERERIIFALTQLNELMNH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNNYSQSIHDKDYDEFIQDIELLIRNVNSVIKRRGREILQDFNITPPQFIALQSLTKEG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
DLTIGELSDRLFLACSTVTDLVDRMEKNELVKRYRDDKDRRIVRIKVLEKGHKLISEVIA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ARQEYLKNILKDLSKSERERIIFALTQLNELMNH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]