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The map label for this gene is yjcR [C]

Identifier: 188586557

GI number: 188586557

Start: 2048910

End: 2050262

Strand: Reverse

Name: yjcR [C]

Synonym: Nther_1943

Alternate gene names: 188586557

Gene position: 2050262-2048910 (Counterclockwise)

Preceding gene: 188586559

Following gene: 188586556

Centisome position: 64.77

GC content: 40.95

Gene sequence:

>1353_bases
ATGACTACAGAGCAAAAAAATTCTAAATTCAAATTATCCAGAAATAAATTGATAGTTATTGGGTTGGCAGTTTTGGCGAT
AGTAAGTGGTTATTTTATTATCAATTTTACCGGTGATGGATTTGCTGAAGAGGAGAATAGTAATGTCGATAAGGAACAAG
ACCACTCACTAGTAGATGTTAAACAAGTGCCAAGGCAAAACATTGAAAAAACAGTAACAGTATCAGGGAATGTTGAAGCT
GCCGATGATCGGTTGGTGATTCCCCAAGCCAGTGGAGAAATAGAAACAATTCATTACGAAGAAGGAGATAAAGTTAGTCA
GGATGATATCTTAATGGAAATAGATAGTGAAGACGCCAGACTACAAAGACAAGAAGCCGAAGCTGCTTTAGACGCAGCCA
GAGCTAATTTAGAAGAAGCTGAGGCTGGAGCTCAAGATGCAGAGTTAGTCGAAGCTGAAAATGCAGTATCTAATGCTGAA
GATAACTTAAGGCAAGCTGAAAAAGAACTTGAGAGAATAGAAGAAATGCATCAAGAAGAATTTGCTACCGATCAACAACT
TGAACAAGCAGAAATGCAGTACAATAATGCCAAGTCCCAACTTGAATCAGCTGAAGCTGCTAAGGATGCTGTAGAAGATG
GCGCCAGACAGGAACAGCTTGATGCTTTAGAGGCACAAGTGAGGCAAGCAGAAACTGGAGTAGAGCTAGCTAAGCGAGCG
GAAGAAAACAGTCAAGTGAAAGCACCAGCTTCAGGCACAATAGTTTCCTCAGAGTTTAGTGAAGGGGAAATGGCCGGAGC
GGGGGAACCTGCCTTTATGATTATGGATCAGGATACTTTTCAGGTGACGGCTACTGCCCCAGCCTCCTATGTCCATCAGA
TCTCTGTAGGGGACTCAACAGAAATTAGAATTCCCGCCCTTAACGAGAATTTTCAAGGAGAGATTCAGCGTATTGGTGAG
ATTCCAGCAGAAAAAGGACGCAACTATCCTGTTGAAATAGCAATCACAGAGGAAAACAATGATCTCCGGACTGGTATGTT
TGCGGAAAACTATCTAGTCATTGAAAGACATGTAGACGTCCTGGCTGTTCCTCGTAGTTCTCTGGTAGAGCATAATGATG
AAATAGGAATCTATACGGTAAACCAGGATAGTACAATAGATTTTAATGTTTTAGAATTAGGAATTTCCCAGGAAGGGTAT
TTGCAAGTCGTTGATGGACTACAAGAAGATGATGTGATAGTCGTAGGCGGTCAATCAGAAGTTGTTCCAGGAGAAGAAGT
AAAGAAAAATTATCTTCAAGAAGCAAAAAGTTCTGACATAACTAATGGTGAAAATCATGGGGGCGGTAATTAA

Upstream 100 bases:

>100_bases
GGTTTTGATTTCTGTCTAAAACTATCTTAACTCCGGGACGGAGACTGATTCAAATATCATATAACTTAACAGAACTAAAT
AAATGGTTGGGAGGCTAATT

Downstream 100 bases:

>100_bases
TGTTTCTTTCAAAAATTGCACTAAAACGTCCAGTTACCATAATTATGGCTGTTGTTATTATATTACTTCTGGCTACTGTT
TCTTTTTCTAGAATACCAAT

Product: efflux transporter, RND family, MFP subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MTTEQKNSKFKLSRNKLIVIGLAVLAIVSGYFIINFTGDGFAEEENSNVDKEQDHSLVDVKQVPRQNIEKTVTVSGNVEA
ADDRLVIPQASGEIETIHYEEGDKVSQDDILMEIDSEDARLQRQEAEAALDAARANLEEAEAGAQDAELVEAENAVSNAE
DNLRQAEKELERIEEMHQEEFATDQQLEQAEMQYNNAKSQLESAEAAKDAVEDGARQEQLDALEAQVRQAETGVELAKRA
EENSQVKAPASGTIVSSEFSEGEMAGAGEPAFMIMDQDTFQVTATAPASYVHQISVGDSTEIRIPALNENFQGEIQRIGE
IPAEKGRNYPVEIAITEENNDLRTGMFAENYLVIERHVDVLAVPRSSLVEHNDEIGIYTVNQDSTIDFNVLELGISQEGY
LQVVDGLQEDDVIVVGGQSEVVPGEEVKKNYLQEAKSSDITNGENHGGGN

Sequences:

>Translated_450_residues
MTTEQKNSKFKLSRNKLIVIGLAVLAIVSGYFIINFTGDGFAEEENSNVDKEQDHSLVDVKQVPRQNIEKTVTVSGNVEA
ADDRLVIPQASGEIETIHYEEGDKVSQDDILMEIDSEDARLQRQEAEAALDAARANLEEAEAGAQDAELVEAENAVSNAE
DNLRQAEKELERIEEMHQEEFATDQQLEQAEMQYNNAKSQLESAEAAKDAVEDGARQEQLDALEAQVRQAETGVELAKRA
EENSQVKAPASGTIVSSEFSEGEMAGAGEPAFMIMDQDTFQVTATAPASYVHQISVGDSTEIRIPALNENFQGEIQRIGE
IPAEKGRNYPVEIAITEENNDLRTGMFAENYLVIERHVDVLAVPRSSLVEHNDEIGIYTVNQDSTIDFNVLELGISQEGY
LQVVDGLQEDDVIVVGGQSEVVPGEEVKKNYLQEAKSSDITNGENHGGGN
>Mature_449_residues
TTEQKNSKFKLSRNKLIVIGLAVLAIVSGYFIINFTGDGFAEEENSNVDKEQDHSLVDVKQVPRQNIEKTVTVSGNVEAA
DDRLVIPQASGEIETIHYEEGDKVSQDDILMEIDSEDARLQRQEAEAALDAARANLEEAEAGAQDAELVEAENAVSNAED
NLRQAEKELERIEEMHQEEFATDQQLEQAEMQYNNAKSQLESAEAAKDAVEDGARQEQLDALEAQVRQAETGVELAKRAE
ENSQVKAPASGTIVSSEFSEGEMAGAGEPAFMIMDQDTFQVTATAPASYVHQISVGDSTEIRIPALNENFQGEIQRIGEI
PAEKGRNYPVEIAITEENNDLRTGMFAENYLVIERHVDVLAVPRSSLVEHNDEIGIYTVNQDSTIDFNVLELGISQEGYL
QVVDGLQEDDVIVVGGQSEVVPGEEVKKNYLQEAKSSDITNGENHGGGN

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790519, Length=242, Percent_Identity=28.5123966942149, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081796, Length=377, Percent_Identity=22.8116710875332, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 49329; Mature: 49198

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTEQKNSKFKLSRNKLIVIGLAVLAIVSGYFIINFTGDGFAEEENSNVDKEQDHSLVDV
CCCCCCCCEEEECCCCEEEHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHCCCCHHH
KQVPRQNIEKTVTVSGNVEAADDRLVIPQASGEIETIHYEEGDKVSQDDILMEIDSEDAR
HHCCCCCCCEEEEECCCCEECCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCHHH
LQRQEAEAALDAARANLEEAEAGAQDAELVEAENAVSNAEDNLRQAEKELERIEEMHQEE
HHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FATDQQLEQAEMQYNNAKSQLESAEAAKDAVEDGARQEQLDALEAQVRQAETGVELAKRA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
EENSQVKAPASGTIVSSEFSEGEMAGAGEPAFMIMDQDTFQVTATAPASYVHQISVGDST
CCCCCEECCCCCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCHHHEEEEECCCCC
EIRIPALNENFQGEIQRIGEIPAEKGRNYPVEIAITEENNDLRTGMFAENYLVIERHVDV
EEEEECCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCEEECCEEEEEECCCE
LAVPRSSLVEHNDEIGIYTVNQDSTIDFNVLELGISQEGYLQVVDGLQEDDVIVVGGQSE
EECCCHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHCCCCCCCEEEECCCCC
VVPGEEVKKNYLQEAKSSDITNGENHGGGN
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TTEQKNSKFKLSRNKLIVIGLAVLAIVSGYFIINFTGDGFAEEENSNVDKEQDHSLVDV
CCCCCCCEEEECCCCEEEHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHCCCCHHH
KQVPRQNIEKTVTVSGNVEAADDRLVIPQASGEIETIHYEEGDKVSQDDILMEIDSEDAR
HHCCCCCCCEEEEECCCCEECCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCHHH
LQRQEAEAALDAARANLEEAEAGAQDAELVEAENAVSNAEDNLRQAEKELERIEEMHQEE
HHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FATDQQLEQAEMQYNNAKSQLESAEAAKDAVEDGARQEQLDALEAQVRQAETGVELAKRA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
EENSQVKAPASGTIVSSEFSEGEMAGAGEPAFMIMDQDTFQVTATAPASYVHQISVGDST
CCCCCEECCCCCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCHHHEEEEECCCCC
EIRIPALNENFQGEIQRIGEIPAEKGRNYPVEIAITEENNDLRTGMFAENYLVIERHVDV
EEEEECCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCEEECCEEEEEECCCE
LAVPRSSLVEHNDEIGIYTVNQDSTIDFNVLELGISQEGYLQVVDGLQEDDVIVVGGQSE
EECCCHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHCCCCCCCEEEECCCCC
VVPGEEVKKNYLQEAKSSDITNGENHGGGN
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]