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The map label for this gene is yqiR [H]

Identifier: 188586300

GI number: 188586300

Start: 1757986

End: 1759752

Strand: Reverse

Name: yqiR [H]

Synonym: Nther_1683

Alternate gene names: 188586300

Gene position: 1759752-1757986 (Counterclockwise)

Preceding gene: 188586301

Following gene: 188586299

Centisome position: 55.59

GC content: 34.47

Gene sequence:

>1767_bases
ATGGTGGATAATAAATTAAGTAACAGCTTTCATGTCAATGAAAGTGAAATCAAACAGATATTAAATTCAACTCATGATGG
CATGCTTGCCGTTGATGATCAAGGTATTGTAACTTTATTTAATAATGCAGCCGAGAGGATCACAAATATAAAAAAAGTAG
ATGTACTCGGTAAATATGCCGAAAAAGTAATTCCAAATACCAGGCTCCCTATAATCTTACAAACTGGCGTCCCGGAATAT
AATCGTCGACAGGAACTTGATCAAAAAACTACAATAATAACAAATAGAGTGCCAGTTTTTGACGACCACGACAATATAAT
GGGAGCTGTAGCTGTTTTTAGAGATATTACTGAAGTGATTTCCCTAGCCGAAGAAGTAACTGATCTCAAAGAGATTGAAA
GCATGTTAAAGGCGATTATTAATTCGACTCAGGATGCTATTTCAGTTGTCGATGAAGACGGATTAGGAATTTTAATTAAT
CCAGCTTATACGGAATTAACTGGATTAACTGAAGAAGATGTAATTGGTAGGCCTGCAACAGTAGACATAGCAGAAGGCGA
GAGTATGCACTATAAAGTATTGCAGACTATGGATTCAGTTAAAAACGTACCTATGAAAGTTGGGCCAAATAAAAAAGATG
TAATTGTCGATGTAGCCCCTATCGTAGTTGATGGAAAATTGAAAGGAAGTGTAGGTGTAATACACGATGTTTCTAAAATA
AAACAGTTAACTGAAGAACTTAATGAAGCCAAGAGTATAATTAGAAAATTAGAGGCTAAATATACCTTCGAAGATATAAT
TGGTCTATCAGAAGATATTGAGACTGCTATTCAACTGGCTAAAACTGCAGCCACTACTCCTGCTACTGTTTTATTAAGAG
GTGAAAGTGGAACGGGAAAAGAGCTCTTTGCTCATGCCATTCATAATACTAGTGAAAGGAAATATAATCCCTTTGTCAGA
GTTAATTGTGCGTCACTTCCTGAAAGTTTACTAGAAAGTGAATTATTTGGGTATGAGGAAGGTGCCTTTACTGGAGCTAA
GAAAGGTGGTAAAAAAGGAGTTTTTGAACAAGCCAAAAATGGGACAATTTTTCTTGACGAGATTGGAGAAATGACTTTAA
ATTTACAAACTAAATTATTAAGAGTTTTGCAAGAATGGGAAATTGTGAGAGTTGGTGGAGAAAGACCGATTTCTATAAAC
TGTCGAGTAATTGCTGCTACTAACAGAGAATTAGAAAAGGCTGTAAATGAAGGGGATTTTAGAAGAGATTTGTACTATAG
ATTAAATGTTATACCAATCCGAATCCCCCCATTACAGGAACGCACTGAAGACATTCCATTATTGGCCCAACATTTAATTA
AAAAATTTAATCAAGAATATGGCAGAAATGTTAAAGAAGTTTCTAACGAAGCTTTGAAAATTTTAGAAAGTTATCACTGG
CCAGGAAATGTTCGGGAACTAGAAAATTTTATTGGTAGAGCAATGATTAATATGAATATGAAAGAGTTTGAAATCAAACC
CAAACACTTACCTCCAATTCACACTCTTGCGGAAAAAAATCAGGCCCCATTAATTGCTCCAGGAATGGAACTTTTAAGTA
ATGATAATCAGATGAGTTTAAAAGACATCCTAACAGAAACGGAAAAGCAGGTAATTAAACAAACATTAGAAGACTATAAT
GGCAATAGAGAACAAGCTGCCAAACAATTGGGGATAGGTTTGAGAACTTTGTATTATAAATTAGAAAAATATCAAATCAA
TCAATAA

Upstream 100 bases:

>100_bases
TTATTCCTTAAGTACAATAATAAAAAAATCTATTGTCCTAAGTTTTATTGACGAGTTAGGTAGAAAATGATCTGGTGTTG
AGAACCGGAGGGAGAAAATA

Downstream 100 bases:

>100_bases
AATCTAGAAATATGAAAAATAACTGAAAGGTATTGCATGTAATATTTTGCAAAAAAACTGCAACAAATTGCAGTTAACCT
AATTGCCAAACTCCTTTTTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 588; Mature: 588

Protein sequence:

>588_residues
MVDNKLSNSFHVNESEIKQILNSTHDGMLAVDDQGIVTLFNNAAERITNIKKVDVLGKYAEKVIPNTRLPIILQTGVPEY
NRRQELDQKTTIITNRVPVFDDHDNIMGAVAVFRDITEVISLAEEVTDLKEIESMLKAIINSTQDAISVVDEDGLGILIN
PAYTELTGLTEEDVIGRPATVDIAEGESMHYKVLQTMDSVKNVPMKVGPNKKDVIVDVAPIVVDGKLKGSVGVIHDVSKI
KQLTEELNEAKSIIRKLEAKYTFEDIIGLSEDIETAIQLAKTAATTPATVLLRGESGTGKELFAHAIHNTSERKYNPFVR
VNCASLPESLLESELFGYEEGAFTGAKKGGKKGVFEQAKNGTIFLDEIGEMTLNLQTKLLRVLQEWEIVRVGGERPISIN
CRVIAATNRELEKAVNEGDFRRDLYYRLNVIPIRIPPLQERTEDIPLLAQHLIKKFNQEYGRNVKEVSNEALKILESYHW
PGNVRELENFIGRAMINMNMKEFEIKPKHLPPIHTLAEKNQAPLIAPGMELLSNDNQMSLKDILTETEKQVIKQTLEDYN
GNREQAAKQLGIGLRTLYYKLEKYQINQ

Sequences:

>Translated_588_residues
MVDNKLSNSFHVNESEIKQILNSTHDGMLAVDDQGIVTLFNNAAERITNIKKVDVLGKYAEKVIPNTRLPIILQTGVPEY
NRRQELDQKTTIITNRVPVFDDHDNIMGAVAVFRDITEVISLAEEVTDLKEIESMLKAIINSTQDAISVVDEDGLGILIN
PAYTELTGLTEEDVIGRPATVDIAEGESMHYKVLQTMDSVKNVPMKVGPNKKDVIVDVAPIVVDGKLKGSVGVIHDVSKI
KQLTEELNEAKSIIRKLEAKYTFEDIIGLSEDIETAIQLAKTAATTPATVLLRGESGTGKELFAHAIHNTSERKYNPFVR
VNCASLPESLLESELFGYEEGAFTGAKKGGKKGVFEQAKNGTIFLDEIGEMTLNLQTKLLRVLQEWEIVRVGGERPISIN
CRVIAATNRELEKAVNEGDFRRDLYYRLNVIPIRIPPLQERTEDIPLLAQHLIKKFNQEYGRNVKEVSNEALKILESYHW
PGNVRELENFIGRAMINMNMKEFEIKPKHLPPIHTLAEKNQAPLIAPGMELLSNDNQMSLKDILTETEKQVIKQTLEDYN
GNREQAAKQLGIGLRTLYYKLEKYQINQ
>Mature_588_residues
MVDNKLSNSFHVNESEIKQILNSTHDGMLAVDDQGIVTLFNNAAERITNIKKVDVLGKYAEKVIPNTRLPIILQTGVPEY
NRRQELDQKTTIITNRVPVFDDHDNIMGAVAVFRDITEVISLAEEVTDLKEIESMLKAIINSTQDAISVVDEDGLGILIN
PAYTELTGLTEEDVIGRPATVDIAEGESMHYKVLQTMDSVKNVPMKVGPNKKDVIVDVAPIVVDGKLKGSVGVIHDVSKI
KQLTEELNEAKSIIRKLEAKYTFEDIIGLSEDIETAIQLAKTAATTPATVLLRGESGTGKELFAHAIHNTSERKYNPFVR
VNCASLPESLLESELFGYEEGAFTGAKKGGKKGVFEQAKNGTIFLDEIGEMTLNLQTKLLRVLQEWEIVRVGGERPISIN
CRVIAATNRELEKAVNEGDFRRDLYYRLNVIPIRIPPLQERTEDIPLLAQHLIKKFNQEYGRNVKEVSNEALKILESYHW
PGNVRELENFIGRAMINMNMKEFEIKPKHLPPIHTLAEKNQAPLIAPGMELLSNDNQMSLKDILTETEKQVIKQTLEDYN
GNREQAAKQLGIGLRTLYYKLEKYQINQ

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=355, Percent_Identity=43.943661971831, Blast_Score=290, Evalue=2e-79,
Organism=Escherichia coli, GI87082117, Length=333, Percent_Identity=45.045045045045, Blast_Score=265, Evalue=9e-72,
Organism=Escherichia coli, GI1790437, Length=318, Percent_Identity=44.6540880503145, Blast_Score=261, Evalue=6e-71,
Organism=Escherichia coli, GI1789233, Length=458, Percent_Identity=33.6244541484716, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1789087, Length=349, Percent_Identity=42.9799426934097, Blast_Score=252, Evalue=5e-68,
Organism=Escherichia coli, GI1786524, Length=402, Percent_Identity=36.0696517412935, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI1788905, Length=228, Percent_Identity=51.7543859649123, Blast_Score=242, Evalue=4e-65,
Organism=Escherichia coli, GI1790299, Length=330, Percent_Identity=42.1212121212121, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI87082152, Length=231, Percent_Identity=49.7835497835498, Blast_Score=223, Evalue=3e-59,
Organism=Escherichia coli, GI1787583, Length=327, Percent_Identity=36.3914373088685, Blast_Score=215, Evalue=8e-57,
Organism=Escherichia coli, GI87081872, Length=308, Percent_Identity=38.961038961039, Blast_Score=198, Evalue=9e-52,
Organism=Escherichia coli, GI87081858, Length=511, Percent_Identity=26.2230919765166, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1789828, Length=225, Percent_Identity=34.6666666666667, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 65977; Mature: 65977

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDNKLSNSFHVNESEIKQILNSTHDGMLAVDDQGIVTLFNNAAERITNIKKVDVLGKYA
CCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHH
EKVIPNTRLPIILQTGVPEYNRRQELDQKTTIITNRVPVFDDHDNIMGAVAVFRDITEVI
HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHH
SLAEEVTDLKEIESMLKAIINSTQDAISVVDEDGLGILINPAYTELTGLTEEDVIGRPAT
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCHHHHCCCCHHHHCCCCCE
VDIAEGESMHYKVLQTMDSVKNVPMKVGPNKKDVIVDVAPIVVDGKLKGSVGVIHDVSKI
EEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHH
KQLTEELNEAKSIIRKLEAKYTFEDIIGLSEDIETAIQLAKTAATTPATVLLRGESGTGK
HHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
ELFAHAIHNTSERKYNPFVRVNCASLPESLLESELFGYEEGAFTGAKKGGKKGVFEQAKN
HHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCC
GTIFLDEIGEMTLNLQTKLLRVLQEWEIVRVGGERPISINCRVIAATNRELEKAVNEGDF
CCEEEECCCCHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCHHHHHHHCCCCH
RRDLYYRLNVIPIRIPPLQERTEDIPLLAQHLIKKFNQEYGRNVKEVSNEALKILESYHW
HHHHEEEEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
PGNVRELENFIGRAMINMNMKEFEIKPKHLPPIHTLAEKNQAPLIAPGMELLSNDNQMSL
CCCHHHHHHHHHHHHHCCCHHHEECCCCCCCCHHHHHCCCCCCEECCCHHHHCCCCCHHH
KDILTETEKQVIKQTLEDYNGNREQAAKQLGIGLRTLYYKLEKYQINQ
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVDNKLSNSFHVNESEIKQILNSTHDGMLAVDDQGIVTLFNNAAERITNIKKVDVLGKYA
CCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHH
EKVIPNTRLPIILQTGVPEYNRRQELDQKTTIITNRVPVFDDHDNIMGAVAVFRDITEVI
HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHH
SLAEEVTDLKEIESMLKAIINSTQDAISVVDEDGLGILINPAYTELTGLTEEDVIGRPAT
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCHHHHCCCCHHHHCCCCCE
VDIAEGESMHYKVLQTMDSVKNVPMKVGPNKKDVIVDVAPIVVDGKLKGSVGVIHDVSKI
EEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHH
KQLTEELNEAKSIIRKLEAKYTFEDIIGLSEDIETAIQLAKTAATTPATVLLRGESGTGK
HHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
ELFAHAIHNTSERKYNPFVRVNCASLPESLLESELFGYEEGAFTGAKKGGKKGVFEQAKN
HHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCC
GTIFLDEIGEMTLNLQTKLLRVLQEWEIVRVGGERPISINCRVIAATNRELEKAVNEGDF
CCEEEECCCCHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCHHHHHHHCCCCH
RRDLYYRLNVIPIRIPPLQERTEDIPLLAQHLIKKFNQEYGRNVKEVSNEALKILESYHW
HHHHEEEEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
PGNVRELENFIGRAMINMNMKEFEIKPKHLPPIHTLAEKNQAPLIAPGMELLSNDNQMSL
CCCHHHHHHHHHHHHHCCCHHHEECCCCCCCCHHHHHCCCCCCEECCCHHHHCCCCCHHH
KDILTETEKQVIKQTLEDYNGNREQAAKQLGIGLRTLYYKLEKYQINQ
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]