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The map label for this gene is ywhC [H]

Identifier: 188586270

GI number: 188586270

Start: 1730457

End: 1731119

Strand: Reverse

Name: ywhC [H]

Synonym: Nther_1653

Alternate gene names: 188586270

Gene position: 1731119-1730457 (Counterclockwise)

Preceding gene: 188586271

Following gene: 188586269

Centisome position: 54.69

GC content: 35.6

Gene sequence:

>663_bases
ATGGATAATATATTTATAGGAGACATTTTGCATATAATTCCGGCACTTTTAATTGCTTTAACTGTTCATGAATACTCTCA
TGGTAGAATAGCCTATTATTTAGGTGATGAGACCGCTAAAGCCCAAGGGCGGTTAACTTTAAATCCATTAGATCACTTGG
ATCCCATAGGTTTTCTAATGGTTGCCATTGCTGGGTTTGGATGGGCTAAACCTGTTCCTGTAAATCCAGTAAATTTTAGA
AGAGATGTTGATATGCGACATGGGATGTTACTTGTTTCACTGGCAGGACCTGTTAGCAATCTTATTATGGCTTTTATATT
TTTGGGCGTATCTGACTTTTATTTGAGATTTACACAGGGACTTGGTGGTATTGGTCCCGGTGTTGCTTTGAATCCGAATT
ACAATCATCCTGTCTTATATTATATTGTCTTGTTTAATATTTTTTTGGCGATTTTTAATTTGCTCCCGGTTCCTCCATTG
GATGGGTCGAGAATCTTGCGAGCAATAGTACCAAGAAGATTTGAAGAGTACTTTAATTATTTAGACCAGTATGGTTTTAT
AATCTTAATACTACTAATTGTTTCCGGGGCCATTAGAGCAATTTTGTGGCCTCTAACCATAATTATATTATCTATCTTGT
ATTTACCTTTTCAGTTGATATAA

Upstream 100 bases:

>100_bases
GAAGAAGTTAGAAAAGCAAGATTAGACGGACTGGTTACAACTCCTGAAGAAGAATTAGAATATGTGCTAGATTTTTTTGA
ACAGAAAGGAGAAGATATGC

Downstream 100 bases:

>100_bases
CAGGTGGTGGTGACTTTGAAATACCAGGTTTCTTTACCTAATTTTGAAGGTCCTTTGGATCTTTTATATCACCTGGTTAA
AAAAGCGGAAGTAGACATAT

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MDNIFIGDILHIIPALLIALTVHEYSHGRIAYYLGDETAKAQGRLTLNPLDHLDPIGFLMVAIAGFGWAKPVPVNPVNFR
RDVDMRHGMLLVSLAGPVSNLIMAFIFLGVSDFYLRFTQGLGGIGPGVALNPNYNHPVLYYIVLFNIFLAIFNLLPVPPL
DGSRILRAIVPRRFEEYFNYLDQYGFIILILLIVSGAIRAILWPLTIIILSILYLPFQLI

Sequences:

>Translated_220_residues
MDNIFIGDILHIIPALLIALTVHEYSHGRIAYYLGDETAKAQGRLTLNPLDHLDPIGFLMVAIAGFGWAKPVPVNPVNFR
RDVDMRHGMLLVSLAGPVSNLIMAFIFLGVSDFYLRFTQGLGGIGPGVALNPNYNHPVLYYIVLFNIFLAIFNLLPVPPL
DGSRILRAIVPRRFEEYFNYLDQYGFIILILLIVSGAIRAILWPLTIIILSILYLPFQLI
>Mature_220_residues
MDNIFIGDILHIIPALLIALTVHEYSHGRIAYYLGDETAKAQGRLTLNPLDHLDPIGFLMVAIAGFGWAKPVPVNPVNFR
RDVDMRHGMLLVSLAGPVSNLIMAFIFLGVSDFYLRFTQGLGGIGPGVALNPNYNHPVLYYIVLFNIFLAIFNLLPVPPL
DGSRILRAIVPRRFEEYFNYLDQYGFIILILLIVSGAIRAILWPLTIIILSILYLPFQLI

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24660; Mature: 24660

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNIFIGDILHIIPALLIALTVHEYSHGRIAYYLGDETAKAQGRLTLNPLDHLDPIGFLM
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCEEECCHHHHCHHHHHH
VAIAGFGWAKPVPVNPVNFRRDVDMRHGMLLVSLAGPVSNLIMAFIFLGVSDFYLRFTQG
HHHHCCCCCCCCCCCCCCCCCCCHHHCCEEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHC
LGGIGPGVALNPNYNHPVLYYIVLFNIFLAIFNLLPVPPLDGSRILRAIVPRRFEEYFNY
CCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LDQYGFIILILLIVSGAIRAILWPLTIIILSILYLPFQLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNIFIGDILHIIPALLIALTVHEYSHGRIAYYLGDETAKAQGRLTLNPLDHLDPIGFLM
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCEEECCHHHHCHHHHHH
VAIAGFGWAKPVPVNPVNFRRDVDMRHGMLLVSLAGPVSNLIMAFIFLGVSDFYLRFTQG
HHHHCCCCCCCCCCCCCCCCCCCHHHCCEEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHC
LGGIGPGVALNPNYNHPVLYYIVLFNIFLAIFNLLPVPPLDGSRILRAIVPRRFEEYFNY
CCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LDQYGFIILILLIVSGAIRAILWPLTIIILSILYLPFQLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]