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The map label for this gene is fni [H]

Identifier: 188586254

GI number: 188586254

Start: 1717075

End: 1718127

Strand: Reverse

Name: fni [H]

Synonym: Nther_1637

Alternate gene names: 188586254

Gene position: 1718127-1717075 (Counterclockwise)

Preceding gene: 188586255

Following gene: 188586253

Centisome position: 54.28

GC content: 36.56

Gene sequence:

>1053_bases
ATGATAAATCGAAGTGATAGGAAATCAGATCATTTACATCTAGCAATTAACCAATATGATACTCAAAATATTCTAGAAGA
CATAAAGTTACTTCATAATTGTTTACCTGAATGTAATTACGATGAAATTAATTTATCTACATCTCTTTGTGGTCTCAATT
TTAATAATCCAATTATGATTAACGCCATTACTGGAGGGACCCAAGAAGCTTATCAATTAAATAAGAAAATTGCTAGTGTA
GCAAGGGAAGTTAATATACCCATGGCTGTTGGTAGCCAGAAGATAGCCCTTGAAGACCAAAATTATCAAGATACATTTGA
AGTAGTTCGAAGGGAAAATCCCCGTGGAGTCATATTTGCCAATATTGGGGCTTATGCTACTCCCCAAATGGCTCAACAGA
TATGTGAAATGATAAAAGCTGATGGCTTGCAAATACATTTAAATATTCCACAGGAGTTGGCCATGGGTGAAGGGGATCGA
TCATTTCAAGGTTATGCAAATAACATAGCTAAGATAATTGACTATGTAGATATTCCAGTTATTGTAAAAGAAGTGGGCTT
TGGAGTTAAAAAAGAAGAAATATCGAAACTGATGGATATTGGCGTAAAAGCTGTAGATATTTCAGGTTGTGGTGGTACCA
ATTTCATAAATTTAGAAAATAGTCGGTTAGAACAACCTAACCTGCCATCAGCTAAAGATTGGGGGATTGACACTGGAAGT
TCACTTTTAGAAGCTGTAGAAAGTAGTTATCATAATTTGGATATTATTGCTTCAGGAGGCTTCTCCAGGTCAATAGAAAT
AACTAAAGCTTTAGCCTTAGGTGCCAGGTGTGTTGCTTTAGCTGGCTATCCCTTACACATTTTGTGGCATTATGGCCAAG
ATGAACTGATTTCTCAACTAGAGCAACTGCTAACTGAGTTGAGGTCAATGATGTTAATGTGTGGTGCCACCAGTATATCT
CAATTATGCCAGACTCCCTTACTAATCACTGGAAAACTAAGGGAACATGCTGATCTTAGAGGTATAGACGTCAAAAAATA
CGCACGCAGATAG

Upstream 100 bases:

>100_bases
GAGTTTGCAAAATATCAGGATAGTCAAGAGGAAGAAGAAGGTGTGAAATTAGGAGATATGTTTGGTGATGTACTAGAGGA
AATAAAGGAAGATGATAAGG

Downstream 100 bases:

>100_bases
GTAGAAAAACGCGCTAACTAGCGCGTTTTTTTTATTGCTAGTTATTAAATAATAATAGAATAATTTCAAAACATTTAGGT
TACTATAAAAGATGCCAAAT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MINRSDRKSDHLHLAINQYDTQNILEDIKLLHNCLPECNYDEINLSTSLCGLNFNNPIMINAITGGTQEAYQLNKKIASV
AREVNIPMAVGSQKIALEDQNYQDTFEVVRRENPRGVIFANIGAYATPQMAQQICEMIKADGLQIHLNIPQELAMGEGDR
SFQGYANNIAKIIDYVDIPVIVKEVGFGVKKEEISKLMDIGVKAVDISGCGGTNFINLENSRLEQPNLPSAKDWGIDTGS
SLLEAVESSYHNLDIIASGGFSRSIEITKALALGARCVALAGYPLHILWHYGQDELISQLEQLLTELRSMMLMCGATSIS
QLCQTPLLITGKLREHADLRGIDVKKYARR

Sequences:

>Translated_350_residues
MINRSDRKSDHLHLAINQYDTQNILEDIKLLHNCLPECNYDEINLSTSLCGLNFNNPIMINAITGGTQEAYQLNKKIASV
AREVNIPMAVGSQKIALEDQNYQDTFEVVRRENPRGVIFANIGAYATPQMAQQICEMIKADGLQIHLNIPQELAMGEGDR
SFQGYANNIAKIIDYVDIPVIVKEVGFGVKKEEISKLMDIGVKAVDISGCGGTNFINLENSRLEQPNLPSAKDWGIDTGS
SLLEAVESSYHNLDIIASGGFSRSIEITKALALGARCVALAGYPLHILWHYGQDELISQLEQLLTELRSMMLMCGATSIS
QLCQTPLLITGKLREHADLRGIDVKKYARR
>Mature_350_residues
MINRSDRKSDHLHLAINQYDTQNILEDIKLLHNCLPECNYDEINLSTSLCGLNFNNPIMINAITGGTQEAYQLNKKIASV
AREVNIPMAVGSQKIALEDQNYQDTFEVVRRENPRGVIFANIGAYATPQMAQQICEMIKADGLQIHLNIPQELAMGEGDR
SFQGYANNIAKIIDYVDIPVIVKEVGFGVKKEEISKLMDIGVKAVDISGCGGTNFINLENSRLEQPNLPSAKDWGIDTGS
SLLEAVESSYHNLDIIASGGFSRSIEITKALALGARCVALAGYPLHILWHYGQDELISQLEQLLTELRSMMLMCGATSIS
QLCQTPLLITGKLREHADLRGIDVKKYARR

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 38735; Mature: 38735

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINRSDRKSDHLHLAINQYDTQNILEDIKLLHNCLPECNYDEINLSTSLCGLNFNNPIMI
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCCCCCCEEE
NAITGGTQEAYQLNKKIASVAREVNIPMAVGSQKIALEDQNYQDTFEVVRRENPRGVIFA
EEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCHHHHHHHHCCCCCEEEEE
NIGAYATPQMAQQICEMIKADGLQIHLNIPQELAMGEGDRSFQGYANNIAKIIDYVDIPV
CCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHCHHH
IVKEVGFGVKKEEISKLMDIGVKAVDISGCGGTNFINLENSRLEQPNLPSAKDWGIDTGS
HHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH
SLLEAVESSYHNLDIIASGGFSRSIEITKALALGARCVALAGYPLHILWHYGQDELISQL
HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHEEECCCCEEEEEECCHHHHHHHH
EQLLTELRSMMLMCGATSISQLCQTPLLITGKLREHADLRGIDVKKYARR
HHHHHHHHHHHHHHCCHHHHHHHCCCCEEECCHHHCCCCCCCCHHHHHCC
>Mature Secondary Structure
MINRSDRKSDHLHLAINQYDTQNILEDIKLLHNCLPECNYDEINLSTSLCGLNFNNPIMI
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCCCCCCEEE
NAITGGTQEAYQLNKKIASVAREVNIPMAVGSQKIALEDQNYQDTFEVVRRENPRGVIFA
EEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCHHHHHHHHCCCCCEEEEE
NIGAYATPQMAQQICEMIKADGLQIHLNIPQELAMGEGDRSFQGYANNIAKIIDYVDIPV
CCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHCHHH
IVKEVGFGVKKEEISKLMDIGVKAVDISGCGGTNFINLENSRLEQPNLPSAKDWGIDTGS
HHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH
SLLEAVESSYHNLDIIASGGFSRSIEITKALALGARCVALAGYPLHILWHYGQDELISQL
HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHEEECCCCEEEEEECCHHHHHHHH
EQLLTELRSMMLMCGATSISQLCQTPLLITGKLREHADLRGIDVKKYARR
HHHHHHHHHHHHHHCCHHHHHHHCCCCEEECCHHHCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA