Click here to switch to the map view.

The map label for this gene is spoVAF [H]

Identifier: 188586228

GI number: 188586228

Start: 1689557

End: 1691038

Strand: Reverse

Name: spoVAF [H]

Synonym: Nther_1611

Alternate gene names: 188586228

Gene position: 1691038-1689557 (Counterclockwise)

Preceding gene: 188586229

Following gene: 188586227

Centisome position: 53.42

GC content: 36.91

Gene sequence:

>1482_bases
TTGAATGAGTTAAAGGATACCTCAATTCACAAAGATATAGAAAAAAACGTAGACACTCTGAAACAGTATCTGGGTACTGA
AGAGAGTTTTGATGTTGTTATAAGAGAGTTTGAAATTGGCGACAATAAAGCAGCTCTTTGTTATATTGATGCCTTCGGAG
ATGATCAAATAGTAACCTTGATTATGCAAAACCTAGTCAAGGTTGAACGTAAAGAAATTGTTCCTAATACACACGATAAA
ATTCTTCAAAAAACCATCCCATACACCGAAACAGAAGTTTTAACCGATTTGCAGGATGCAGTTGACGAAATGCTCGCAGG
TCAGATGTTGCTGTTTAATGATGGCGAAGATAAAGTGATAGTGTTAGATACAAGATGGTATCCAGCAAGAGACCCAGAAG
AACCTGAAGTAGAAAGAATAACAAGAGGGTCTAGAGATGGTTTCGTTGAAACTATCATGTTCAATATAGGCCTTATAAGA
AGAAGAATTAGGGATCCAAGACTTAGAGTTAAGCCATACAGGATAGGGCGACGTTCCAAAACAGATATTGCTTTACTGTA
CATGAACGACATTACTAATCAGGAATTGATAGAGAATATTGAAGATGAGATAAATAGTATTGATATAGACGGTATTCCAA
TGGCTGAAAAAACCGTAGAGGAATATATTACTCGTGAATTTTTAAATCCGTACCCTCAGGTCCGTTATACAGAAAGAGCG
GATGTAGCAGCAATACATCTTATGGAAGGCCATGCGGTTATCTTAGTGGATACTTCACCATCTGCAATTATCGCACCTAC
AACTTTGTTTTCTCATATGCAACATGCCGAAGAGTATAGACAAAACGCTTTAGTTGGAACTTATCTTAGATGGATTAGAT
ATATCGGAATTTTCATTAGTTTATTTCTTGCACCACTTTGGCTAATGTTTTCACTAGAACCTGATTTATTGCCAGAAGCT
CTTGCTTTTATTGGACCAGAAGAAGTGGGACCCATTCCCATAGCAATTCAATTTATTATGGCTCATGTGTTTGTCGATTT
AGTAAAACTAGCATCTGTACATACTCCAACACCTTTAGCTACAGCCCTGGGACTGGTAGCGGCAATTTTGATAGGGGAAA
TTGCAGTAGATGTGCAAGTATTTGTTCCTGAAGTCTTATTGTATATCAGTATTGCCGCTGTTGGTATGTTTTCTACACCA
AGTCACGAGTTTCAAATGGCAAACAGAGTTTCACATTTAGTTCTCTTAGTTTTAATAGGATTATTTAGCTATTACGGGCT
CCTAATTGGTCTCTTAGGTGGTTTAATTTTCTTGGCAACAACTAAATCTTTCGGAGTCCCTTATTTATGGCCTTTAATTC
CTCTGAATTGGGATGCTTTAACAGCGATCCTGTACAGAAAACCAGTACCCATGAGAAATTTTAAACGTCCTCAAGCATTA
AAGTCTAAAGACAAATACCGAAAAGACAAAGATAATAATTAA

Upstream 100 bases:

>100_bases
AACTTTCTATAAACTAGGAGTAAACTATTGTGATAATAATATGATTAAACTGGGACAATAAAACTAGACAATAAGTCTGT
AAATTAAGGAGGAAGGCATT

Downstream 100 bases:

>100_bases
GTTTTAAAATTAAATATATTAAATAGCATTAAAAGCGCCTAAAAGAGGGCGCTTTTATTATTTAAAAAAAAGATTTACTT
TTCATCCAAATGCTGCTAAA

Product: GerA spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MNELKDTSIHKDIEKNVDTLKQYLGTEESFDVVIREFEIGDNKAALCYIDAFGDDQIVTLIMQNLVKVERKEIVPNTHDK
ILQKTIPYTETEVLTDLQDAVDEMLAGQMLLFNDGEDKVIVLDTRWYPARDPEEPEVERITRGSRDGFVETIMFNIGLIR
RRIRDPRLRVKPYRIGRRSKTDIALLYMNDITNQELIENIEDEINSIDIDGIPMAEKTVEEYITREFLNPYPQVRYTERA
DVAAIHLMEGHAVILVDTSPSAIIAPTTLFSHMQHAEEYRQNALVGTYLRWIRYIGIFISLFLAPLWLMFSLEPDLLPEA
LAFIGPEEVGPIPIAIQFIMAHVFVDLVKLASVHTPTPLATALGLVAAILIGEIAVDVQVFVPEVLLYISIAAVGMFSTP
SHEFQMANRVSHLVLLVLIGLFSYYGLLIGLLGGLIFLATTKSFGVPYLWPLIPLNWDALTAILYRKPVPMRNFKRPQAL
KSKDKYRKDKDNN

Sequences:

>Translated_493_residues
MNELKDTSIHKDIEKNVDTLKQYLGTEESFDVVIREFEIGDNKAALCYIDAFGDDQIVTLIMQNLVKVERKEIVPNTHDK
ILQKTIPYTETEVLTDLQDAVDEMLAGQMLLFNDGEDKVIVLDTRWYPARDPEEPEVERITRGSRDGFVETIMFNIGLIR
RRIRDPRLRVKPYRIGRRSKTDIALLYMNDITNQELIENIEDEINSIDIDGIPMAEKTVEEYITREFLNPYPQVRYTERA
DVAAIHLMEGHAVILVDTSPSAIIAPTTLFSHMQHAEEYRQNALVGTYLRWIRYIGIFISLFLAPLWLMFSLEPDLLPEA
LAFIGPEEVGPIPIAIQFIMAHVFVDLVKLASVHTPTPLATALGLVAAILIGEIAVDVQVFVPEVLLYISIAAVGMFSTP
SHEFQMANRVSHLVLLVLIGLFSYYGLLIGLLGGLIFLATTKSFGVPYLWPLIPLNWDALTAILYRKPVPMRNFKRPQAL
KSKDKYRKDKDNN
>Mature_493_residues
MNELKDTSIHKDIEKNVDTLKQYLGTEESFDVVIREFEIGDNKAALCYIDAFGDDQIVTLIMQNLVKVERKEIVPNTHDK
ILQKTIPYTETEVLTDLQDAVDEMLAGQMLLFNDGEDKVIVLDTRWYPARDPEEPEVERITRGSRDGFVETIMFNIGLIR
RRIRDPRLRVKPYRIGRRSKTDIALLYMNDITNQELIENIEDEINSIDIDGIPMAEKTVEEYITREFLNPYPQVRYTERA
DVAAIHLMEGHAVILVDTSPSAIIAPTTLFSHMQHAEEYRQNALVGTYLRWIRYIGIFISLFLAPLWLMFSLEPDLLPEA
LAFIGPEEVGPIPIAIQFIMAHVFVDLVKLASVHTPTPLATALGLVAAILIGEIAVDVQVFVPEVLLYISIAAVGMFSTP
SHEFQMANRVSHLVLLVLIGLFSYYGLLIGLLGGLIFLATTKSFGVPYLWPLIPLNWDALTAILYRKPVPMRNFKRPQAL
KSKDKYRKDKDNN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 56071; Mature: 56071

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELKDTSIHKDIEKNVDTLKQYLGTEESFDVVIREFEIGDNKAALCYIDAFGDDQIVTL
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCEEEEEEECCCCCHHHHH
IMQNLVKVERKEIVPNTHDKILQKTIPYTETEVLTDLQDAVDEMLAGQMLLFNDGEDKVI
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEEE
VLDTRWYPARDPEEPEVERITRGSRDGFVETIMFNIGLIRRRIRDPRLRVKPYRIGRRSK
EEECCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC
TDIALLYMNDITNQELIENIEDEINSIDIDGIPMAEKTVEEYITREFLNPYPQVRYTERA
CCEEEEEECCCCCHHHHHHHHHHHCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCC
DVAAIHLMEGHAVILVDTSPSAIIAPTTLFSHMQHAEEYRQNALVGTYLRWIRYIGIFIS
CEEEEEEECCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLAPLWLMFSLEPDLLPEALAFIGPEEVGPIPIAIQFIMAHVFVDLVKLASVHTPTPLA
HHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TALGLVAAILIGEIAVDVQVFVPEVLLYISIAAVGMFSTPSHEFQMANRVSHLVLLVLIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LFSYYGLLIGLLGGLIFLATTKSFGVPYLWPLIPLNWDALTAILYRKPVPMRNFKRPQAL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHH
KSKDKYRKDKDNN
HHHHHHCCCCCCC
>Mature Secondary Structure
MNELKDTSIHKDIEKNVDTLKQYLGTEESFDVVIREFEIGDNKAALCYIDAFGDDQIVTL
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCEEEEEEECCCCCHHHHH
IMQNLVKVERKEIVPNTHDKILQKTIPYTETEVLTDLQDAVDEMLAGQMLLFNDGEDKVI
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEEE
VLDTRWYPARDPEEPEVERITRGSRDGFVETIMFNIGLIRRRIRDPRLRVKPYRIGRRSK
EEECCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC
TDIALLYMNDITNQELIENIEDEINSIDIDGIPMAEKTVEEYITREFLNPYPQVRYTERA
CCEEEEEECCCCCHHHHHHHHHHHCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCC
DVAAIHLMEGHAVILVDTSPSAIIAPTTLFSHMQHAEEYRQNALVGTYLRWIRYIGIFIS
CEEEEEEECCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLAPLWLMFSLEPDLLPEALAFIGPEEVGPIPIAIQFIMAHVFVDLVKLASVHTPTPLA
HHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TALGLVAAILIGEIAVDVQVFVPEVLLYISIAAVGMFSTPSHEFQMANRVSHLVLLVLIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LFSYYGLLIGLLGGLIFLATTKSFGVPYLWPLIPLNWDALTAILYRKPVPMRNFKRPQAL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHH
KSKDKYRKDKDNN
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 7934829; 1368705; 3926949 [H]