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The map label for this gene is cspA [H]

Identifier: 188586202

GI number: 188586202

Start: 1665329

End: 1665532

Strand: Reverse

Name: cspA [H]

Synonym: Nther_1584

Alternate gene names: 188586202

Gene position: 1665532-1665329 (Counterclockwise)

Preceding gene: 188586204

Following gene: 188586198

Centisome position: 52.61

GC content: 38.73

Gene sequence:

>204_bases
TTGACAACAGGTACAGTAAAATGGTTTGATTCTAAGAAAGGTTACGGATTCATTGAAAGAGAATCCGGAGAAGGAGATGT
TTTCGTACACTTCAGTGCTATCAACGAGGAAGGATTTAAATCTTTAGAAGATGGCCAAGAGGTTGAATTTGAAGTGGTTG
AGGCAGATCGCGGACCACAAGCAGCAAATGTTAATAAGTTATAA

Upstream 100 bases:

>100_bases
AAGGAATACAAATCTGACAAGATAAATTCTTTATAGACCTTGATTTTTTCGTTTTTATATGAGAAAATGCAAAAAACAAG
ATTTTAGGAGGTAGTTTTAG

Downstream 100 bases:

>100_bases
GAATTAAATGTGAACGATTAACATAGTGCCATCAAACACCCCGGGATTACATCCCGGGGTTAAATTATTTGTATATGAAT
GAGCAAAATAAAGTAAAGCC

Product: cold-shock DNA-binding protein family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MTTGTVKWFDSKKGYGFIERESGEGDVFVHFSAINEEGFKSLEDGQEVEFEVVEADRGPQAANVNKL

Sequences:

>Translated_67_residues
MTTGTVKWFDSKKGYGFIERESGEGDVFVHFSAINEEGFKSLEDGQEVEFEVVEADRGPQAANVNKL
>Mature_66_residues
TTGTVKWFDSKKGYGFIERESGEGDVFVHFSAINEEGFKSLEDGQEVEFEVVEADRGPQAANVNKL

Specific function: Involved in cold stress response [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=65, Percent_Identity=50.7692307692308, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI224586884, Length=65, Percent_Identity=50.7692307692308, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI34098946, Length=65, Percent_Identity=50.7692307692308, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI156415990, Length=65, Percent_Identity=49.2307692307692, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=59.375, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=53.8461538461538, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=54.6875, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=52.3076923076923, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=51.6129032258064, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=52.3076923076923, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=43.75, Blast_Score=65, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24663131, Length=66, Percent_Identity=53.030303030303, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7458; Mature: 7327

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGTVKWFDSKKGYGFIERESGEGDVFVHFSAINEEGFKSLEDGQEVEFEVVEADRGPQ
CCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCC
AANVNKL
CCCCCCC
>Mature Secondary Structure 
TTGTVKWFDSKKGYGFIERESGEGDVFVHFSAINEEGFKSLEDGQEVEFEVVEADRGPQ
CCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCC
AANVNKL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA