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The map label for this gene is yoaA [C]

Identifier: 188585732

GI number: 188585732

Start: 1169704

End: 1171614

Strand: Direct

Name: yoaA [C]

Synonym: Nther_1106

Alternate gene names: 188585732

Gene position: 1169704-1171614 (Clockwise)

Preceding gene: 188585731

Following gene: 188585733

Centisome position: 36.95

GC content: 35.95

Gene sequence:

>1911_bases
GTGTCGTCTCAATGGGAGGAACTGGATCAGATTTGGGAAGACTTACAGCATCATATCGATAAATTCGAAACTAGAGAAGG
ACAAATAGATATGAGCCTTGGGGTTTTAAAAGCTCTCCAAGATGGAGGGCATTTTGTAGTAGAGGCAGGAACTGGTACAG
GAAAGTCCCTGGCCTATCTGTTGCCTGCAGTTCAGCTGGCACAGGATGAATTTAGAATGGTTATCTCTACAGCTACCATC
GCCTTACAAGAACAACTACTTCAGAAGGATATCCCTTTGGTTGAAAAAATTATTGGGAGAACCCTGAGAGTTGAAGTGAT
TAAAGGTAGAAGCAATTATCTTTGTAAACAGAAATTTAATCAACATTTTGGACAAACAAGCTTTGTTAACTCAATTCAAG
AGCGTGAACTGATTGAATGGGTAAATGAAACAGAGACGGGTGATCGCAATGAACTCCAAACAATGCCGGAAATTTGGGAA
AAAGTTTGTTCTCAAAGCGAAAGTTGCTTGGCTATGAGATGTCAATTTTACAGTGAATGCTTTGTGGTTAAATTGAGAAA
AAGGGCAGAAACTGCAGAACTGTTAGTAACTAACCATCATTTATATTTTAGTGATCTTAATCTAAGAATAGATTCAGATG
GGTCTATGTCTATTTTCCCTGATTATGAAGGAGTTATTTTTGATGAAGCTCATCATATACCTGATACGGCCACTAAATCT
CTCGGAAGGGAAGTGAAATATTCCCGGGTAATAAAATTATTTAAAGAAGTGACCAGCTATTTAAAACAAAAATTTCAAGC
TCAAGTGAATTTAGTCCAAGAGGCGGAAGCCAGTGCCGTTAAGGCTTTTAATAAACTTTCTGATTTCAGAGAAAGTGATT
ATTTATTAAGGGAATTAGATTCATTTATCTCCCTAAAGGAATTTAGAAAAAAGTTATCTAAATTAGCACAACATGTGGAG
GAATGTGCGTTAGAAGAAATGGATCGACCAGAACAACCAAGAATGTTGGCTTCTAGATTAAATAAGACAAAGCTTGACTT
GGATTTGATATTAGATTTAGAGGAAGAGGACTATATTTCATGGGTTAATCAGCAATCATCGGACATTTCTTTATCAACAA
ATCCTGTATTTGTTCATAAACAGTTAAGGGAATTTTTATTCGATAATGTAGACAGGATTATTATGACCTCGGCAACTTTG
TCTATAAATGGAAAGTTTGCTTATTTTAAAAACAGGGTGGGGCTTAGTCAAGATGCCCAAACATATCAAATAGAATCTCC
ATTTAACTATCAAGAACAATCCAATATATATATTCCTAAGAATTTTCCAGAACCCAGGTCAGGGGAGTATAACAGGCAGT
TAGCAGATACCATTGAACAAATTATCGATGCAGCTGGTGGAAGAACTTTAGTGTTATTTACAAGCTATTCTACACTTAAT
AGTATATATAATCAGCTTAAAGATAAAGTCCCCTATGAAATTTATTGTCAGGGGATTCATCCAAAAAATAAAATTTTGTC
TTGGTTTCAAAACGATGCCAGTTCCGTTCTCATGGCTACTAATAGTTTTAGAGAAGGTGTAGACGTACCCGGTAGTTCAC
TGCAAGTAGTTATTATGGATAAATTACCCTTTGCAGTACCCGATAATCCTTTAATAAAGGCTAAAATTGAAAAACTGCAA
CAAGAAGGACAAAATAGCTTTATGAACTATCAGTTGCCAGAAGCTGTATTGGCTGTAAAGCAAGGGTTCGGTAGATTAAT
AAGGCATAATAATGACTGTGGAATCTTTGCCCTTCTGGATCCTAGAGTTTTTACTAAATCTTATGGGCGTCACTTCATAA
ATTCTCTCCCTAATGCACCCCTTATATCAAATTGGTCGGAATTAGAAGCTAAAATAAAAACCTTACCTTAA

Upstream 100 bases:

>100_bases
ATGAATTATGGCAAATTATAGAAGATTTACTATAGATTAACAGGAAATTATCTTAATTGTAATTTCACATCTTCATGTTG
ACTTGGACGGAGGGATGATT

Downstream 100 bases:

>100_bases
ATTGTTGACAATTATTATTAATTTGAATAAAATATAATCATAACCAATTATCAATAATAGTTACTAATACTAGTAACAAT
AAGGGGGGAAAGGGCTTGCT

Product: helicase c2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 636; Mature: 635

Protein sequence:

>636_residues
MSSQWEELDQIWEDLQHHIDKFETREGQIDMSLGVLKALQDGGHFVVEAGTGTGKSLAYLLPAVQLAQDEFRMVISTATI
ALQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQKFNQHFGQTSFVNSIQERELIEWVNETETGDRNELQTMPEIWE
KVCSQSESCLAMRCQFYSECFVVKLRKRAETAELLVTNHHLYFSDLNLRIDSDGSMSIFPDYEGVIFDEAHHIPDTATKS
LGREVKYSRVIKLFKEVTSYLKQKFQAQVNLVQEAEASAVKAFNKLSDFRESDYLLRELDSFISLKEFRKKLSKLAQHVE
ECALEEMDRPEQPRMLASRLNKTKLDLDLILDLEEEDYISWVNQQSSDISLSTNPVFVHKQLREFLFDNVDRIIMTSATL
SINGKFAYFKNRVGLSQDAQTYQIESPFNYQEQSNIYIPKNFPEPRSGEYNRQLADTIEQIIDAAGGRTLVLFTSYSTLN
SIYNQLKDKVPYEIYCQGIHPKNKILSWFQNDASSVLMATNSFREGVDVPGSSLQVVIMDKLPFAVPDNPLIKAKIEKLQ
QEGQNSFMNYQLPEAVLAVKQGFGRLIRHNNDCGIFALLDPRVFTKSYGRHFINSLPNAPLISNWSELEAKIKTLP

Sequences:

>Translated_636_residues
MSSQWEELDQIWEDLQHHIDKFETREGQIDMSLGVLKALQDGGHFVVEAGTGTGKSLAYLLPAVQLAQDEFRMVISTATI
ALQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQKFNQHFGQTSFVNSIQERELIEWVNETETGDRNELQTMPEIWE
KVCSQSESCLAMRCQFYSECFVVKLRKRAETAELLVTNHHLYFSDLNLRIDSDGSMSIFPDYEGVIFDEAHHIPDTATKS
LGREVKYSRVIKLFKEVTSYLKQKFQAQVNLVQEAEASAVKAFNKLSDFRESDYLLRELDSFISLKEFRKKLSKLAQHVE
ECALEEMDRPEQPRMLASRLNKTKLDLDLILDLEEEDYISWVNQQSSDISLSTNPVFVHKQLREFLFDNVDRIIMTSATL
SINGKFAYFKNRVGLSQDAQTYQIESPFNYQEQSNIYIPKNFPEPRSGEYNRQLADTIEQIIDAAGGRTLVLFTSYSTLN
SIYNQLKDKVPYEIYCQGIHPKNKILSWFQNDASSVLMATNSFREGVDVPGSSLQVVIMDKLPFAVPDNPLIKAKIEKLQ
QEGQNSFMNYQLPEAVLAVKQGFGRLIRHNNDCGIFALLDPRVFTKSYGRHFINSLPNAPLISNWSELEAKIKTLP
>Mature_635_residues
SSQWEELDQIWEDLQHHIDKFETREGQIDMSLGVLKALQDGGHFVVEAGTGTGKSLAYLLPAVQLAQDEFRMVISTATIA
LQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQKFNQHFGQTSFVNSIQERELIEWVNETETGDRNELQTMPEIWEK
VCSQSESCLAMRCQFYSECFVVKLRKRAETAELLVTNHHLYFSDLNLRIDSDGSMSIFPDYEGVIFDEAHHIPDTATKSL
GREVKYSRVIKLFKEVTSYLKQKFQAQVNLVQEAEASAVKAFNKLSDFRESDYLLRELDSFISLKEFRKKLSKLAQHVEE
CALEEMDRPEQPRMLASRLNKTKLDLDLILDLEEEDYISWVNQQSSDISLSTNPVFVHKQLREFLFDNVDRIIMTSATLS
INGKFAYFKNRVGLSQDAQTYQIESPFNYQEQSNIYIPKNFPEPRSGEYNRQLADTIEQIIDAAGGRTLVLFTSYSTLNS
IYNQLKDKVPYEIYCQGIHPKNKILSWFQNDASSVLMATNSFREGVDVPGSSLQVVIMDKLPFAVPDNPLIKAKIEKLQQ
EGQNSFMNYQLPEAVLAVKQGFGRLIRHNNDCGIFALLDPRVFTKSYGRHFINSLPNAPLISNWSELEAKIKTLP

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=628, Percent_Identity=33.7579617834395, Blast_Score=352, Evalue=4e-98,
Organism=Escherichia coli, GI1787018, Length=691, Percent_Identity=25.3256150506512, Blast_Score=195, Evalue=8e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR001650
- InterPro:   IPR006935 [H]

Pfam domain/function: PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 72988; Mature: 72857

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQWEELDQIWEDLQHHIDKFETREGQIDMSLGVLKALQDGGHFVVEAGTGTGKSLAYL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEECCCCCCCHHHHH
LPAVQLAQDEFRMVISTATIALQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQKFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEEEEECCCCHHHHHHHH
QHFGQTSFVNSIQERELIEWVNETETGDRNELQTMPEIWEKVCSQSESCLAMRCQFYSEC
HHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FVVKLRKRAETAELLVTNHHLYFSDLNLRIDSDGSMSIFPDYEGVIFDEAHHIPDTATKS
HHHHHHHHCCHHHEEEECCEEEEEEEEEEECCCCCEEECCCCCCEEECCCCCCCCHHHHH
LGREVKYSRVIKLFKEVTSYLKQKFQAQVNLVQEAEASAVKAFNKLSDFRESDYLLRELD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFISLKEFRKKLSKLAQHVEECALEEMDRPEQPRMLASRLNKTKLDLDLILDLEEEDYIS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHH
WVNQQSSDISLSTNPVFVHKQLREFLFDNVDRIIMTSATLSINGKFAYFKNRVGLSQDAQ
HHCCCCCCCEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEHHCCCCCCCCCC
TYQIESPFNYQEQSNIYIPKNFPEPRSGEYNRQLADTIEQIIDAAGGRTLVLFTSYSTLN
EEEECCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
SIYNQLKDKVPYEIYCQGIHPKNKILSWFQNDASSVLMATNSFREGVDVPGSSLQVVIMD
HHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCHHEEEEHHHHHCCCCCCCCCEEEEEEE
KLPFAVPDNPLIKAKIEKLQQEGQNSFMNYQLPEAVLAVKQGFGRLIRHNNDCGIFALLD
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEC
PRVFTKSYGRHFINSLPNAPLISNWSELEAKIKTLP
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SSQWEELDQIWEDLQHHIDKFETREGQIDMSLGVLKALQDGGHFVVEAGTGTGKSLAYL
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEECCCCCCCHHHHH
LPAVQLAQDEFRMVISTATIALQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQKFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEEEEECCCCHHHHHHHH
QHFGQTSFVNSIQERELIEWVNETETGDRNELQTMPEIWEKVCSQSESCLAMRCQFYSEC
HHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FVVKLRKRAETAELLVTNHHLYFSDLNLRIDSDGSMSIFPDYEGVIFDEAHHIPDTATKS
HHHHHHHHCCHHHEEEECCEEEEEEEEEEECCCCCEEECCCCCCEEECCCCCCCCHHHHH
LGREVKYSRVIKLFKEVTSYLKQKFQAQVNLVQEAEASAVKAFNKLSDFRESDYLLRELD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFISLKEFRKKLSKLAQHVEECALEEMDRPEQPRMLASRLNKTKLDLDLILDLEEEDYIS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHH
WVNQQSSDISLSTNPVFVHKQLREFLFDNVDRIIMTSATLSINGKFAYFKNRVGLSQDAQ
HHCCCCCCCEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEHHCCCCCCCCCC
TYQIESPFNYQEQSNIYIPKNFPEPRSGEYNRQLADTIEQIIDAAGGRTLVLFTSYSTLN
EEEECCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
SIYNQLKDKVPYEIYCQGIHPKNKILSWFQNDASSVLMATNSFREGVDVPGSSLQVVIMD
HHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCHHEEEEHHHHHCCCCCCCCCEEEEEEE
KLPFAVPDNPLIKAKIEKLQQEGQNSFMNYQLPEAVLAVKQGFGRLIRHNNDCGIFALLD
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEC
PRVFTKSYGRHFINSLPNAPLISNWSELEAKIKTLP
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]