BacMap

Definition	Natranaerobius thermophilus JW/NM-WN-LF, complete genome.
Accession	NC_010718
Length	3,165,557

Click here to switch to the map view.

The map label for this gene is nodI [H]

Identifier: 188585639

GI number: 188585639

Start: 1078499

End: 1079413

Strand: Direct

Name: nodI [H]

Synonym: Nther_1012

Alternate gene names: 188585639

Gene position: 1078499-1079413 (Clockwise)

Preceding gene: 188585638

Following gene: 188585640

Centisome position: 34.07

GC content: 32.24

Gene sequence:

>915_bases
GTGTGTGAAATCATTAATGTGAAAGGCTTAACTACAGAGGATAGGAGTGGCCAATCATTAAATGATTTAAACTTTACTGT
GAACCGAGGAGAAATTTTTGCTATCTTAGGTCATTATGGAGCCGGAAAAACAACTTTGTTAGACTGTATGACTAGAATAA
ATACTCCGAGTCAAGGTTCTATAATTTATAATATTAATAGTAACAAGGAAGATATCTATAAACATATAGGTGTGCAGATG
CAAGCACAATATTTTGAACATCCATGGTTAACGGTAAAAGAAGTTTGTGAAATGTACAAAGAAATGTTCCAAAGTGATGT
GGAGATAACGCAATTATTAGAAGAATTCAATTTACAGAAGCAAAGTAATACTTTTGTTGAGTATCTCTCAAATGATAATC
AAAGAAAGCTCAATATTTTATTAACCCTTATTAAAGATCCAGAAATTATTTTTTTAGACGAACCGACAACAAATTTGAAT
CCAGTGCCAAGAAAAGAAGTTTTGGAAAACATAAAAAAGATACGGACTAATAGAAAAAAGACCATTGTTATGTGCACATA
CTTGATTAATGAAGTAGCTTATTTGGCCGATAGAACACTGGTTTTACACAAAGGAGAACAAGTGTGTTTAGATGAAGTAT
CTTCGATTTTAGAAGACTACTCACTAAAATGGCAGATCATTGAATTTCAGATTAAAGACCAAAAAGCGAGTTCACAGTTG
ATGAAATATCAGGTGACTCAATTGAGTGGTGATCGCTATAAATTGTTAACTTCCGACGCCCATAAGATGTTAACACAACT
AAAGCAAGATGTAGATATAGTAGATGAAAAGATTAAAGATCCCACTTTAGAAGATATATTTAGTAAATTTGCCGGGTACA
AAATAGATAGAGAGGGGAGGATTGTTAATGAATAA

Upstream 100 bases:

>100_bases
TTATTGTAATAAGCTCACAATTAAACATCAGCTTCTGTAAACGACTCTTTACGAAATTTTAGAATTATTGTAAAATTCAG
GCAAAACTGGAGGGATGAGG

Downstream 100 bases:

>100_bases
CAAATTTGTACCCCTGCTTTCATACCAATTAAGATCTGATTTTAGAGATTATAGAAACTCAATTTTTATCATAGTGATCC
CACTATTGCTAGTAACTTAT

Product: ABC transporter related

Products: NA

Alternate protein names: Nodulation ATP-binding protein I [H]

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MCEIINVKGLTTEDRSGQSLNDLNFTVNRGEIFAILGHYGAGKTTLLDCMTRINTPSQGSIIYNINSNKEDIYKHIGVQM
QAQYFEHPWLTVKEVCEMYKEMFQSDVEITQLLEEFNLQKQSNTFVEYLSNDNQRKLNILLTLIKDPEIIFLDEPTTNLN
PVPRKEVLENIKKIRTNRKKTIVMCTYLINEVAYLADRTLVLHKGEQVCLDEVSSILEDYSLKWQIIEFQIKDQKASSQL
MKYQVTQLSGDRYKLLTSDAHKMLTQLKQDVDIVDEKIKDPTLEDIFSKFAGYKIDREGRIVNE

Sequences:

>Translated_304_residues
MCEIINVKGLTTEDRSGQSLNDLNFTVNRGEIFAILGHYGAGKTTLLDCMTRINTPSQGSIIYNINSNKEDIYKHIGVQM
QAQYFEHPWLTVKEVCEMYKEMFQSDVEITQLLEEFNLQKQSNTFVEYLSNDNQRKLNILLTLIKDPEIIFLDEPTTNLN
PVPRKEVLENIKKIRTNRKKTIVMCTYLINEVAYLADRTLVLHKGEQVCLDEVSSILEDYSLKWQIIEFQIKDQKASSQL
MKYQVTQLSGDRYKLLTSDAHKMLTQLKQDVDIVDEKIKDPTLEDIFSKFAGYKIDREGRIVNE
>Mature_304_residues
MCEIINVKGLTTEDRSGQSLNDLNFTVNRGEIFAILGHYGAGKTTLLDCMTRINTPSQGSIIYNINSNKEDIYKHIGVQM
QAQYFEHPWLTVKEVCEMYKEMFQSDVEITQLLEEFNLQKQSNTFVEYLSNDNQRKLNILLTLIKDPEIIFLDEPTTNLN
PVPRKEVLENIKKIRTNRKKTIVMCTYLINEVAYLADRTLVLHKGEQVCLDEVSSILEDYSLKWQIIEFQIKDQKASSQL
MKYQVTQLSGDRYKLLTSDAHKMLTQLKQDVDIVDEKIKDPTLEDIFSKFAGYKIDREGRIVNE

Specific function: Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=240, Percent_Identity=30.8333333333333, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI6005701, Length=301, Percent_Identity=24.5847176079734, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI27477115, Length=202, Percent_Identity=29.7029702970297, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI153792144, Length=202, Percent_Identity=31.1881188118812, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI105990541, Length=200, Percent_Identity=30, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI116734710, Length=218, Percent_Identity=30.7339449541284, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI45446740, Length=206, Percent_Identity=30.0970873786408, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI47078218, Length=206, Percent_Identity=30.0970873786408, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI30795238, Length=215, Percent_Identity=30.2325581395349, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI27881501, Length=215, Percent_Identity=30.2325581395349, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI150417984, Length=199, Percent_Identity=30.6532663316583, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI27262624, Length=220, Percent_Identity=26.8181818181818, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI27262626, Length=220, Percent_Identity=26.8181818181818, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI31657092, Length=213, Percent_Identity=29.1079812206573, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI21536376, Length=222, Percent_Identity=27.4774774774775, Blast_Score=82, Evalue=5e-16,
Organism=Escherichia coli, GI87081782, Length=214, Percent_Identity=25.2336448598131, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI48994943, Length=209, Percent_Identity=27.7511961722488, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786398, Length=217, Percent_Identity=24.8847926267281, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789032, Length=227, Percent_Identity=24.2290748898678, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=26.1802575107296, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790525, Length=240, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=26.8518518518519, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789672, Length=200, Percent_Identity=27.5, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787112, Length=192, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081791, Length=230, Percent_Identity=24.3478260869565, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=25.3731343283582, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=25.9574468085106, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786345, Length=216, Percent_Identity=21.7592592592593, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786253, Length=230, Percent_Identity=23.0434782608696, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=25, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081709, Length=214, Percent_Identity=22.8971962616822, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693107, Length=227, Percent_Identity=22.0264317180617, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788761, Length=238, Percent_Identity=23.5294117647059, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790190, Length=248, Percent_Identity=24.1935483870968, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1790467, Length=205, Percent_Identity=25.8536585365854, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789962, Length=223, Percent_Identity=22.4215246636771, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787792, Length=192, Percent_Identity=26.0416666666667, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786319, Length=280, Percent_Identity=21.4285714285714, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787758, Length=229, Percent_Identity=24.8908296943231, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI48994883, Length=231, Percent_Identity=24.2424242424242, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790739, Length=251, Percent_Identity=21.1155378486056, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786872, Length=183, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788472, Length=214, Percent_Identity=22.4299065420561, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=203, Percent_Identity=28.0788177339901, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17510237, Length=235, Percent_Identity=26.8085106382979, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71983516, Length=212, Percent_Identity=29.7169811320755, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71983523, Length=212, Percent_Identity=29.7169811320755, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71983510, Length=212, Percent_Identity=29.7169811320755, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI115533608, Length=300, Percent_Identity=24, Blast_Score=83, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6319856, Length=206, Percent_Identity=31.5533980582524, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6324498, Length=227, Percent_Identity=27.3127753303965, Blast_Score=73, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24643674, Length=270, Percent_Identity=27.7777777777778, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=27.1028037383178, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=27.1028037383178, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI85725262, Length=248, Percent_Identity=29.8387096774194, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24650853, Length=212, Percent_Identity=29.2452830188679, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24650855, Length=212, Percent_Identity=29.2452830188679, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI221512771, Length=214, Percent_Identity=28.0373831775701, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281362751, Length=210, Percent_Identity=29.0476190476191, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24666092, Length=218, Percent_Identity=23.394495412844, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24648314, Length=316, Percent_Identity=24.3670886075949, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI116007328, Length=312, Percent_Identity=25.3205128205128, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI28574150, Length=312, Percent_Identity=25.3205128205128, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI28571871, Length=216, Percent_Identity=28.7037037037037, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28574533, Length=165, Percent_Identity=30.3030303030303, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI45552199, Length=217, Percent_Identity=27.1889400921659, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24581407, Length=217, Percent_Identity=27.1889400921659, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28573571, Length=197, Percent_Identity=26.9035532994924, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571209, Length=176, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28573573, Length=197, Percent_Identity=26.9035532994924, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015851
- InterPro:   IPR005978
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 35278; Mature: 35278

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCEIINVKGLTTEDRSGQSLNDLNFTVNRGEIFAILGHYGAGKTTLLDCMTRINTPSQGS
CCEEEECCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
IIYNINSNKEDIYKHIGVQMQAQYFEHPWLTVKEVCEMYKEMFQSDVEITQLLEEFNLQK
EEEEECCCHHHHHHHHCCCEEHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
QSNTFVEYLSNDNQRKLNILLTLIKDPEIIFLDEPTTNLNPVPRKEVLENIKKIRTNRKK
CCCHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC
TIVMCTYLINEVAYLADRTLVLHKGEQVCLDEVSSILEDYSLKWQIIEFQIKDQKASSQL
EEEHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHH
MKYQVTQLSGDRYKLLTSDAHKMLTQLKQDVDIVDEKIKDPTLEDIFSKFAGYKIDREGR
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCCC
IVNE
CCCC
>Mature Secondary Structure
MCEIINVKGLTTEDRSGQSLNDLNFTVNRGEIFAILGHYGAGKTTLLDCMTRINTPSQGS
CCEEEECCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
IIYNINSNKEDIYKHIGVQMQAQYFEHPWLTVKEVCEMYKEMFQSDVEITQLLEEFNLQK
EEEEECCCHHHHHHHHCCCEEHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
QSNTFVEYLSNDNQRKLNILLTLIKDPEIIFLDEPTTNLNPVPRKEVLENIKKIRTNRKK
CCCHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC
TIVMCTYLINEVAYLADRTLVLHKGEQVCLDEVSSILEDYSLKWQIIEFQIKDQKASSQL
EEEHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHH
MKYQVTQLSGDRYKLLTSDAHKMLTQLKQDVDIVDEKIKDPTLEDIFSKFAGYKIDREGR
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCCC
IVNE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8755627 [H]