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The map label for this gene is yjiM [H]

Identifier: 188585456

GI number: 188585456

Start: 865557

End: 866738

Strand: Reverse

Name: yjiM [H]

Synonym: Nther_0828

Alternate gene names: 188585456

Gene position: 866738-865557 (Counterclockwise)

Preceding gene: 188585457

Following gene: 188585455

Centisome position: 27.38

GC content: 35.45

Gene sequence:

>1182_bases
TTGGCCATGAAAACACTTAAGGGAGGGCTTTATTTGAGACCACAAACCATGGAGTTTTTTGATAGTTTGATTCCAGAGAA
TATGGCTAAAATCAAAGAATTAAAGGAAGCTGGAAGAAATGTCGTAGGATATTATTGTGTTTTTACACCGGTTGAACTGA
TAGAAGCTTCTGGAGCAATTCCAGTTGGACTTTGTGCTACAAAACAGGACCCTATACCAGCAGCTGAGGAAGATCTACCG
AGAAATCTGTGTCCTTTGATTAAGTCAAGTTATGGTTTTGCTAAAACTGATACTTGTCCGTTCTTTTATTTTTCCGATGT
GGTAATGGCAGAGACCACATGTGATGGTAAGAAAAAAATGTATGAAATGCTAAATGAATATAAACCTATGATGGTATTAG
ATATTCCAAATTCATCGACATATGAAAAAAAGCAAGAACACTGGATCCAAGAATTAAAACGTGCCAAATCATATCTAGAA
GAACAGTTTGATGTGGAGGTTACTCAAGAGAGCTTGGAAAAAGCCATTAAAGGCCATAATCAGGAGAGAACGAAGTTAAT
GGAGCTTGTTTCTCTAAACCAGCACAACCCCGCACCATTATCAGGGCAAGACCTTTTAAAAGTTATTTGGGCACGGCAGT
TTCAACTAAATCGTGATGAATATCTTGAAAAAATACAAAATATTATTAATGAAACCAAAGAAATAATAAATAATCAGTCC
TTTGACGATAGTTTGGCAAAAAAACCGCGAATACTAGTTACCGGCTCCCCTACTGGTGTTGGGCAAGAAAAAACCCTGAA
TATTATAGAACAACAAGGTGGACAAGTTGTTCTTAAAGAAGCCTGTTCAGGTGTGAAGGGTCTAGTTAAAAATATTAGTG
AAACAGAAGAGCCATTAGCTGCTATAGCTGAAAAATACATGGAACTTCCTTGCTCATGTATTTCACCAAATGATGGAAGA
TTTGAGCTCATTAGTGAGTTAGTAAAAGACTATCAAATTGATGGAGTAATAGATATAACTTTACAAGCATGTCACACTTA
TAATATTGAATCTTATTTACTAAAAGAACATCTCCAAAAAAATCATGACATACCTATGCTTCAGATAGAAACTGACTATA
CAGATACAGATGTTGAACAGATTAAACTTCGCGTAGACTCTTTTTTAGAAATGTTGTCTTAA

Upstream 100 bases:

>100_bases
AAAAGTCATGTACTTCGTACATTTTTGCAAGAAGCAGGTAATTTTCAAATTTATACTATTAATGAGCCAATGATTACTGC
AGCATTAGGAGCCGCTATCA

Downstream 100 bases:

>100_bases
ATTTAAATAATATCAAACTATCCTTCGAATAAGTATTTTGTATGACCCCCTGCTTAGAATCTTGCCGTCTAAGTAGGGGG
TTTTAATCTTTCATTATAGA

Product: 2-hydroxyglutaryl-CoA dehydratase D-component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MAMKTLKGGLYLRPQTMEFFDSLIPENMAKIKELKEAGRNVVGYYCVFTPVELIEASGAIPVGLCATKQDPIPAAEEDLP
RNLCPLIKSSYGFAKTDTCPFFYFSDVVMAETTCDGKKKMYEMLNEYKPMMVLDIPNSSTYEKKQEHWIQELKRAKSYLE
EQFDVEVTQESLEKAIKGHNQERTKLMELVSLNQHNPAPLSGQDLLKVIWARQFQLNRDEYLEKIQNIINETKEIINNQS
FDDSLAKKPRILVTGSPTGVGQEKTLNIIEQQGGQVVLKEACSGVKGLVKNISETEEPLAAIAEKYMELPCSCISPNDGR
FELISELVKDYQIDGVIDITLQACHTYNIESYLLKEHLQKNHDIPMLQIETDYTDTDVEQIKLRVDSFLEMLS

Sequences:

>Translated_393_residues
MAMKTLKGGLYLRPQTMEFFDSLIPENMAKIKELKEAGRNVVGYYCVFTPVELIEASGAIPVGLCATKQDPIPAAEEDLP
RNLCPLIKSSYGFAKTDTCPFFYFSDVVMAETTCDGKKKMYEMLNEYKPMMVLDIPNSSTYEKKQEHWIQELKRAKSYLE
EQFDVEVTQESLEKAIKGHNQERTKLMELVSLNQHNPAPLSGQDLLKVIWARQFQLNRDEYLEKIQNIINETKEIINNQS
FDDSLAKKPRILVTGSPTGVGQEKTLNIIEQQGGQVVLKEACSGVKGLVKNISETEEPLAAIAEKYMELPCSCISPNDGR
FELISELVKDYQIDGVIDITLQACHTYNIESYLLKEHLQKNHDIPMLQIETDYTDTDVEQIKLRVDSFLEMLS
>Mature_392_residues
AMKTLKGGLYLRPQTMEFFDSLIPENMAKIKELKEAGRNVVGYYCVFTPVELIEASGAIPVGLCATKQDPIPAAEEDLPR
NLCPLIKSSYGFAKTDTCPFFYFSDVVMAETTCDGKKKMYEMLNEYKPMMVLDIPNSSTYEKKQEHWIQELKRAKSYLEE
QFDVEVTQESLEKAIKGHNQERTKLMELVSLNQHNPAPLSGQDLLKVIWARQFQLNRDEYLEKIQNIINETKEIINNQSF
DDSLAKKPRILVTGSPTGVGQEKTLNIIEQQGGQVVLKEACSGVKGLVKNISETEEPLAAIAEKYMELPCSCISPNDGRF
ELISELVKDYQIDGVIDITLQACHTYNIESYLLKEHLQKNHDIPMLQIETDYTDTDVEQIKLRVDSFLEMLS

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0007 [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=379, Percent_Identity=44.0633245382586, Blast_Score=357, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 44686; Mature: 44555

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMKTLKGGLYLRPQTMEFFDSLIPENMAKIKELKEAGRNVVGYYCVFTPVELIEASGAI
CCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCC
PVGLCATKQDPIPAAEEDLPRNLCPLIKSSYGFAKTDTCPFFYFSDVVMAETTCDGKKKM
EEEEECCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
YEMLNEYKPMMVLDIPNSSTYEKKQEHWIQELKRAKSYLEEQFDVEVTQESLEKAIKGHN
HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
QERTKLMELVSLNQHNPAPLSGQDLLKVIWARQFQLNRDEYLEKIQNIINETKEIINNQS
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
FDDSLAKKPRILVTGSPTGVGQEKTLNIIEQQGGQVVLKEACSGVKGLVKNISETEEPLA
CCHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
AIAEKYMELPCSCISPNDGRFELISELVKDYQIDGVIDITLQACHTYNIESYLLKEHLQK
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHCCHHHHHHHHHHHH
NHDIPMLQIETDYTDTDVEQIKLRVDSFLEMLS
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
AMKTLKGGLYLRPQTMEFFDSLIPENMAKIKELKEAGRNVVGYYCVFTPVELIEASGAI
CCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCC
PVGLCATKQDPIPAAEEDLPRNLCPLIKSSYGFAKTDTCPFFYFSDVVMAETTCDGKKKM
EEEEECCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
YEMLNEYKPMMVLDIPNSSTYEKKQEHWIQELKRAKSYLEEQFDVEVTQESLEKAIKGHN
HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
QERTKLMELVSLNQHNPAPLSGQDLLKVIWARQFQLNRDEYLEKIQNIINETKEIINNQS
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
FDDSLAKKPRILVTGSPTGVGQEKTLNIIEQQGGQVVLKEACSGVKGLVKNISETEEPLA
CCHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
AIAEKYMELPCSCISPNDGRFELISELVKDYQIDGVIDITLQACHTYNIESYLLKEHLQK
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHCCHHHHHHHHHHHH
NHDIPMLQIETDYTDTDVEQIKLRVDSFLEMLS
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]