| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527559
Identifier: 188527559
GI number: 188527559
Start: 763680
End: 765458
Strand: Reverse
Name: 188527559
Synonym: HPSH_03905
Alternate gene names: NA
Gene position: 765458-763680 (Counterclockwise)
Preceding gene: 188527560
Following gene: 188527558
Centisome position: 47.59
GC content: 29.62
Gene sequence:
>1779_bases ATGCACAAATTTTTGGATGGGGCAAAAAGTGAGATTTTAAAATACGATGTGATTTCTTTTGATATTTTTGATACCCTTCT TTTAAGACCTTTCATTAAACCCACAGATTTATTTTTGTATATTGAGACTAAATATGATATTAAAGGTTTTTGTCAAGCAA GGATTTTAGCAGAAATGCAATCTAGAGAAATCAGTAAAGAACAAGACATTACTCTAGATGAAATTTATCATCAAATTCCA AAAGAGTTTCATTCATATAAGGAAGTAGAAATTGCCACTGAAAAAGAGATGCTTATTCCAAACTTAGAGATGTTAGAACT CTATCGTTTCGCTAAAGAGAACAATAAGAGAGTGATTATTGTATCAGATATGTATTTACCTTTAGAGGTCCTTGAAGATA TTTTAATTTCTAAGGGTTTTGATGGTTATACAAATTTCTATCTTAGTAGCCATATAATGCTTACTAAACATTCAAAGGAT TTGTTTAAACATGTTTTAAAACAAGAAAATATTACTCACACACAAATGTTGCATGTTGGTGATAATTCTTGGGCAGATGA CGCTATGCCTAAAAGTTTAGGTATAGCAACGCTATTTAGAAAAAGCGTGTTGAAACAATTTGAAGAAATTTTTCCTAAAT ACCAAACATTTAGTCTAACTAGTGTTGCACAAAGCTTTATTTTAGGATCTTTATGCGTTTTTTATAAAAATTATATTCAA AAACATGAAAAGTTTGATTATTGGTTTCTTTTGGGAGCGATGCAGGCAGGAATTGTAGCCATTGCTTATTGCCAGTTTAT CTATAAAGAGATTCATAAAAGAAATATTGATACTTTAGTGTTTGTTGCACGAGATGGTTATTTATTGCAAAAAATTTTTA ATATTTTATATCCAAATTCATATAAAACTACTTATGTCTATGCTCCCAGAATTTTAAAAAAAGCGGTATTTTTAGAAGTC ATAGAGGGCGAGAGTTTGGAAATTTTGCGTATTTTAGAAGGCGAAGAAGAAATTAAAAAGAAGCAAATCACCACTAACCA ACAAGCATATATATATATATATAGTAACTTTGAACATTGCCGCCATTTAGCGTTAAAATGTTTAGATAATTACAGAAAAT ACTTGTCTTCATTAAATTTAGAGGGAAATATCGCTATTGTAGATACGATTACTTTGGGCTACTCTTCGCAAGAGTTAATA CAAAAAGCTTTGAATAAAGAAGTTTTTGGATGTTATGTGGATCTCTTAAGAATTTTAAATCATGATTGCGTGAGTTTCTT ACCTTTTTCACACCCTAAATCCATTTATTTTCATAATTGGGATTTTATGGAGTTTTTGCTAACAAGCCCTGAATACCCCA TTTTAAATGTAGAAAATGGCGTTCCAATTTATCAAAAAAATGTTTCATCTTGCGAAAAACACCGCTCTAAAGCTTATGAA AAAATAGTAGAAGGGGCTGTTGGATATGCTTCATATTTTAAAGAAAGTCAAATTTCTTTAGACATTCATGATGTGATAAA GTGGGTCAATTTCTTCATTGATCATCCTAGTATTCAAGATCAAGAGCAATTTAAACAAATTTATTTTCTTCCAGATGCAA CGCATAAAAACGCTCTGCCTTTGTTTTGCAACGATGTTTCTTTATTGTCTTGTATTTTAAAACCTTCACAAAGTTATGGC ATATTAAAAAGAAGCCTTAGGACAAACAAGCAAGAGAGATTGTTTAAAATATTATCTCTAATTAAAAAAATCTATGAGAA GTTAAAAAAGAAATCATAA
Upstream 100 bases:
>100_bases ACTCCTTATCTCATTCCTTTAGCTATAGCTTTCCCCCTTTTCTTGTATTTTTGAAAAAAAAAAAATGATATAATGCTCAA ATTTTACAAAGGATTCTTGT
Downstream 100 bases:
>100_bases AATTGGCTCTGTTTCAATCAAATATGGATAACTAGGGCTTTCTCCCTTAAAATTCTCTCAAAAGTTATCCACTAGATATT TTTTATTTATCCAATAGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: HAD Superfamily Hydrolase-Like Protein; Glycosyl Transferase; Hydrolase Protein; Hydrolase Protein-Like Protein; Sugar Transferase; Haloacid Dehalogenase Domain Protein Hydrolase; Haloacid Dehalogenase Domain-Containing Protein Hydrolase; Capsule Polysaccharide Biosynthesis Protein; Hydrolase; Glycosyl Transferase Family Protein; Glycosyltransferase
Number of amino acids: Translated: 592; Mature: 592
Protein sequence:
>592_residues MHKFLDGAKSEILKYDVISFDIFDTLLLRPFIKPTDLFLYIETKYDIKGFCQARILAEMQSREISKEQDITLDEIYHQIP KEFHSYKEVEIATEKEMLIPNLEMLELYRFAKENNKRVIIVSDMYLPLEVLEDILISKGFDGYTNFYLSSHIMLTKHSKD LFKHVLKQENITHTQMLHVGDNSWADDAMPKSLGIATLFRKSVLKQFEEIFPKYQTFSLTSVAQSFILGSLCVFYKNYIQ KHEKFDYWFLLGAMQAGIVAIAYCQFIYKEIHKRNIDTLVFVARDGYLLQKIFNILYPNSYKTTYVYAPRILKKAVFLEV IEGESLEILRILEGEEEIKKKQITTNQQAYIYIYSNFEHCRHLALKCLDNYRKYLSSLNLEGNIAIVDTITLGYSSQELI QKALNKEVFGCYVDLLRILNHDCVSFLPFSHPKSIYFHNWDFMEFLLTSPEYPILNVENGVPIYQKNVSSCEKHRSKAYE KIVEGAVGYASYFKESQISLDIHDVIKWVNFFIDHPSIQDQEQFKQIYFLPDATHKNALPLFCNDVSLLSCILKPSQSYG ILKRSLRTNKQERLFKILSLIKKIYEKLKKKS
Sequences:
>Translated_592_residues MHKFLDGAKSEILKYDVISFDIFDTLLLRPFIKPTDLFLYIETKYDIKGFCQARILAEMQSREISKEQDITLDEIYHQIP KEFHSYKEVEIATEKEMLIPNLEMLELYRFAKENNKRVIIVSDMYLPLEVLEDILISKGFDGYTNFYLSSHIMLTKHSKD LFKHVLKQENITHTQMLHVGDNSWADDAMPKSLGIATLFRKSVLKQFEEIFPKYQTFSLTSVAQSFILGSLCVFYKNYIQ KHEKFDYWFLLGAMQAGIVAIAYCQFIYKEIHKRNIDTLVFVARDGYLLQKIFNILYPNSYKTTYVYAPRILKKAVFLEV IEGESLEILRILEGEEEIKKKQITTNQQAYIYIYSNFEHCRHLALKCLDNYRKYLSSLNLEGNIAIVDTITLGYSSQELI QKALNKEVFGCYVDLLRILNHDCVSFLPFSHPKSIYFHNWDFMEFLLTSPEYPILNVENGVPIYQKNVSSCEKHRSKAYE KIVEGAVGYASYFKESQISLDIHDVIKWVNFFIDHPSIQDQEQFKQIYFLPDATHKNALPLFCNDVSLLSCILKPSQSYG ILKRSLRTNKQERLFKILSLIKKIYEKLKKKS >Mature_592_residues MHKFLDGAKSEILKYDVISFDIFDTLLLRPFIKPTDLFLYIETKYDIKGFCQARILAEMQSREISKEQDITLDEIYHQIP KEFHSYKEVEIATEKEMLIPNLEMLELYRFAKENNKRVIIVSDMYLPLEVLEDILISKGFDGYTNFYLSSHIMLTKHSKD LFKHVLKQENITHTQMLHVGDNSWADDAMPKSLGIATLFRKSVLKQFEEIFPKYQTFSLTSVAQSFILGSLCVFYKNYIQ KHEKFDYWFLLGAMQAGIVAIAYCQFIYKEIHKRNIDTLVFVARDGYLLQKIFNILYPNSYKTTYVYAPRILKKAVFLEV IEGESLEILRILEGEEEIKKKQITTNQQAYIYIYSNFEHCRHLALKCLDNYRKYLSSLNLEGNIAIVDTITLGYSSQELI QKALNKEVFGCYVDLLRILNHDCVSFLPFSHPKSIYFHNWDFMEFLLTSPEYPILNVENGVPIYQKNVSSCEKHRSKAYE KIVEGAVGYASYFKESQISLDIHDVIKWVNFFIDHPSIQDQEQFKQIYFLPDATHKNALPLFCNDVSLLSCILKPSQSYG ILKRSLRTNKQERLFKILSLIKKIYEKLKKKS
Specific function: Unknown
COG id: COG5610
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69463; Mature: 69463
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKFLDGAKSEILKYDVISFDIFDTLLLRPFIKPTDLFLYIETKYDIKGFCQARILAEMQ CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH SREISKEQDITLDEIYHQIPKEFHSYKEVEIATEKEMLIPNLEMLELYRFAKENNKRVII HHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHHCCCCEEEE VSDMYLPLEVLEDILISKGFDGYTNFYLSSHIMLTKHSKDLFKHVLKQENITHTQMLHVG EECCCCCHHHHHHHHHHCCCCCHHHHHEECEEEEEECCHHHHHHHHHHCCCCHHEEEEEC DNSWADDAMPKSLGIATLFRKSVLKQFEEIFPKYQTFSLTSVAQSFILGSLCVFYKNYIQ CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KHEKFDYWFLLGAMQAGIVAIAYCQFIYKEIHKRNIDTLVFVARDGYLLQKIFNILYPNS HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCC YKTTYVYAPRILKKAVFLEVIEGESLEILRILEGEEEIKKKQITTNQQAYIYIYSNFEHC CCEEEEECHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHCCCCCEEEEEEECCHHHH RHLALKCLDNYRKYLSSLNLEGNIAIVDTITLGYSSQELIQKALNKEVFGCYVDLLRILN HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHC HDCVSFLPFSHPKSIYFHNWDFMEFLLTSPEYPILNVENGVPIYQKNVSSCEKHRSKAYE CHHHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH KIVEGAVGYASYFKESQISLDIHDVIKWVNFFIDHPSIQDQEQFKQIYFLPDATHKNALP HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHEEECCCCCCCCCCC LFCNDVSLLSCILKPSQSYGILKRSLRTNKQERLFKILSLIKKIYEKLKKKS EEECHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MHKFLDGAKSEILKYDVISFDIFDTLLLRPFIKPTDLFLYIETKYDIKGFCQARILAEMQ CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH SREISKEQDITLDEIYHQIPKEFHSYKEVEIATEKEMLIPNLEMLELYRFAKENNKRVII HHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHHCCCCEEEE VSDMYLPLEVLEDILISKGFDGYTNFYLSSHIMLTKHSKDLFKHVLKQENITHTQMLHVG EECCCCCHHHHHHHHHHCCCCCHHHHHEECEEEEEECCHHHHHHHHHHCCCCHHEEEEEC DNSWADDAMPKSLGIATLFRKSVLKQFEEIFPKYQTFSLTSVAQSFILGSLCVFYKNYIQ CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KHEKFDYWFLLGAMQAGIVAIAYCQFIYKEIHKRNIDTLVFVARDGYLLQKIFNILYPNS HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCC YKTTYVYAPRILKKAVFLEVIEGESLEILRILEGEEEIKKKQITTNQQAYIYIYSNFEHC CCEEEEECHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHCCCCCEEEEEEECCHHHH RHLALKCLDNYRKYLSSLNLEGNIAIVDTITLGYSSQELIQKALNKEVFGCYVDLLRILN HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHC HDCVSFLPFSHPKSIYFHNWDFMEFLLTSPEYPILNVENGVPIYQKNVSSCEKHRSKAYE CHHHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH KIVEGAVGYASYFKESQISLDIHDVIKWVNFFIDHPSIQDQEQFKQIYFLPDATHKNALP HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHEEECCCCCCCCCCC LFCNDVSLLSCILKPSQSYGILKRSLRTNKQERLFKILSLIKKIYEKLKKKS EEECHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA