| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527542
Identifier: 188527542
GI number: 188527542
Start: 744569
End: 745138
Strand: Reverse
Name: 188527542
Synonym: HPSH_03820
Alternate gene names: NA
Gene position: 745138-744569 (Counterclockwise)
Preceding gene: 188527543
Following gene: 188527541
Centisome position: 46.32
GC content: 39.82
Gene sequence:
>570_bases ATGAAAAAAATTGTTTTAATTTTGGCTTTATGGGTGGGCTTGTTAGGGGCGTTTGAGCCTAAAAAAAGTCATATTTATTT TGGGGCTATGGTGGGTTTAGCCCCTATTGAAATAACCCCAAAACCCGTTAGCGATTCTTCTTATACGGCTTTTTTATGGG GAGCTAAAGGGGGGTATCAATTCGCTTTTTTTAAAGCTCTAGCGCTAAGGGGTGAATTTTCCTACCTTATGGCGATAAAA CCCACCGCATTGCACACGATTAACACTTCTTTATTGAGCCTGAATGCAGATGCGTTGAGCGATTTTTACACTTACAAAAA ATACAGCTTTGGGGTGTATGGGGGGCTTGGGATAGGGTATTTTTATCAAAGCAACCATTTAGGCATGAAAAATAGTTCGT TTATGGGGTATAACGGCTTGTTTAATGTGGGGCTTGGCAGCACGATTGCTCATCACCACCGCATAGAGCTTGGGGCTAAA ATCCCTTTTTCAAGCACCAGAAATTCTTTTAAAAATTCTTATTTTTTAGAGAGCGTTTTTATCCATGCGGCTTATAGTTA TGCGTTTTAA
Upstream 100 bases:
>100_bases CTATGGTGTTAAGCTTACTCATTGTGCCGGTGTTTTATCGCCTTCTCGCTCCCATAGACGACAAAATCAAGCGGTTTTAT CAAAACCAAAAAACTTTAGA
Downstream 100 bases:
>100_bases AAAAGGTTCCAAATAACCCAATGATGGCTTTCAATTACAAGATACGATCCCTATAACCACACAAAGAGATCGTGCATTCT TTTTTAATTGTTATAATGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MKKIVLILALWVGLLGAFEPKKSHIYFGAMVGLAPIEITPKPVSDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIK PTALHTINTSLLSLNADALSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTIAHHHRIELGAK IPFSSTRNSFKNSYFLESVFIHAAYSYAF
Sequences:
>Translated_189_residues MKKIVLILALWVGLLGAFEPKKSHIYFGAMVGLAPIEITPKPVSDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIK PTALHTINTSLLSLNADALSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTIAHHHRIELGAK IPFSSTRNSFKNSYFLESVFIHAAYSYAF >Mature_189_residues MKKIVLILALWVGLLGAFEPKKSHIYFGAMVGLAPIEITPKPVSDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIK PTALHTINTSLLSLNADALSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTIAHHHRIELGAK IPFSSTRNSFKNSYFLESVFIHAAYSYAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20925; Mature: 20925
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIVLILALWVGLLGAFEPKKSHIYFGAMVGLAPIEITPKPVSDSSYTAFLWGAKGGYQ CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEEEEECCCCCH FAFFKALALRGEFSYLMAIKPTALHTINTSLLSLNADALSDFYTYKKYSFGVYGGLGIGY HHHHHHHHHCCCCEEEEEECCCCEEEECHHEEEECHHHHHHHHHHHEECCCEECCCEEEE FYQSNHLGMKNSSFMGYNGLFNVGLGSTIAHHHRIELGAKIPFSSTRNSFKNSYFLESVF EEECCCCCCCCCCCCCCCCEEECCCCCHHHHHEEEEECCCCCCCCCHHHHCCHHHHHHHH IHAAYSYAF HHHHHCCCC >Mature Secondary Structure MKKIVLILALWVGLLGAFEPKKSHIYFGAMVGLAPIEITPKPVSDSSYTAFLWGAKGGYQ CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEEEEECCCCCH FAFFKALALRGEFSYLMAIKPTALHTINTSLLSLNADALSDFYTYKKYSFGVYGGLGIGY HHHHHHHHHCCCCEEEEEECCCCEEEECHHEEEECHHHHHHHHHHHEECCCEECCCEEEE FYQSNHLGMKNSSFMGYNGLFNVGLGSTIAHHHRIELGAKIPFSSTRNSFKNSYFLESVF EEECCCCCCCCCCCCCCCCEEECCCCCHHHHHEEEEECCCCCCCCCHHHHCCHHHHHHHH IHAAYSYAF HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA