Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527522

Identifier: 188527522

GI number: 188527522

Start: 713397

End: 715442

Strand: Reverse

Name: 188527522

Synonym: HPSH_03720

Alternate gene names: NA

Gene position: 715442-713397 (Counterclockwise)

Preceding gene: 188527523

Following gene: 188527520

Centisome position: 44.48

GC content: 39.88

Gene sequence:

>2046_bases
ATGAAAGCAACACAAAGCACCGTTAACGACTTTTTTGCCCTAACAGGCACGATCTTTTCTATCCCTGTATACCAGAGGAA
CTACACTTGGGAAGAAGAAAATTGTGAAAAATTACTGCAAGATATTGTCAGTATTTCTCAAAATAAGAAAACGCATTTCA
TGGGTTCTATCACTTATATTTTGCATTGGATTGATGAAGAAAAGAGCTTAAGAAAACTGCAAGAATTTGTCATCATTGAC
GGGCAGCAAAGGATTACCACTCTCATGCTTTTGCTCAAAGCCATAGAAACAAAGATACCAAATGAAGGGATAAAAAAAGA
GATTGATAATCTACTCAATCTTTCGGGACAAAAGTTGCGTCTCAAACCCATTAAAAGCGACAAAGAAGCCTTTGATTTGG
TCATGCAGAATCGATCGCATGAGATACAAGGCGTATCACACATTAGGAATAATTATAAATTTTTCACCAAAGAGCTTGAC
AATTATATCAGCAAAGGGTATCGCATAGAAGAGATTTATGGGGCGTTTTTGCGGCTTAAAATCGTAGCCATAGGCTTAGA
GTTGGGCGAAGACGATCCGCAAGTGGTGTTTGAGAGCATCAACGCTACAGGCGTGCAATTAAAAGGGCTAGATCTCATAC
GCAACTATCTGATGATGGGGGAAAATTCTGAAAAACAAAAACATCTCTATGATACTTATTGGGTTCCTTTAGAAAATTGG
CTTGGTGAAAAGGATTTGAATGATTTTATCAAAACCTACCTGAGAATCTATTTTGAAGATAAAGTAAAAGAGGGAGAGCG
CGAAGTGTATTACGTGCTAAAAGACCACCACAGAAAAAATTTCCCTAACGATATACAAGGTCTTATGAGCGATATGCGAG
AGTATGGCAGAATCTATCAAATCTTTTTAGACAGAGATCACCATTTTTTAGAGCGTGGAAACCCGCAGCAGTTAGCGAAT
TTACGCCTGCGCATTAAAGATCTCGTAAAAATCAAATTTGGCGTGGCAAAGCCCTTTGTTTTGCGTTGCGCCAGAGATTT
TGAAGAAGGCAAGCTGGATTATGAAAATTTCTACGAAATTTTGCAAATCCTTATCAGCTACTTCGTGCGCAGGAGCGTGT
GCGGAGATCCTACCGGCACGCTTAACAAAGTTCTTTATTCTTTATACAGACAGCTAGAAAATGTTTCAGCCGATGCATTC
AAGCGGTATCTGGGCAAGAGCGTTGGTCAAATGGCGTTCCCCAATGACGATAAAATTAAAGCGGCGTTTGCTGTTCGTAA
CGCTTATTCAGCAAATCAAGCGTGCAAATTCATCCTGCTTGAGATAGAAAAATTAAGTAACGCCGAACCGCCAAAAGAAG
AGAATTTAGAAGTAGAGCATTTCTACCCCCAAACCCCCACACAAGAATGGCGTGATAGGGTGGGGGACTATTTCACTTTT
GAGCAAGACTACCTCAATAATTTTGGGAATCTGACCTTATCAGGGCAAAATCAAAAGCTTGGCAACAAACCTTACGAGGC
AAAAATAGAGCTTATGGAACAACACAGCTCCTTGCATTTGAACGACTATTTCATCAACAACACCCATTCTTGGGGGATAG
AGGAAGTGAAGGCTAGGAGCGAATATTTAGCGGATCAATTTTGTCAAGTGGAATTGTTTAAAGATCTGCCCAAAGAATAC
CGCACCAGAAAGATCAGTAAAACGCTTGATGATGACTTAACTTTCCATAATCTTCAAAGCGTTAAGCTCCCCAATAATGA
GAAGCGTTTGGCAAAAAACGCTGAAGGGTTGGTGAAAGCTGTCATAAACTACTTATTAGAAAATGCCAGAGAGGCCTTTG
AAAGCTACACGGATGAAGCTCAAAGATACATTTATTGGGATAAAGCAAAAGCGCAATTAAGGGATAGAGATGGCACTCTT
GTTGTGCCTTTTGAAAAATACGGATTCTACTTTGTCAGTGGCGCGAGTCTTCAAAATGTGGGCAATAACCTTAGGGATCT
TATCTTAGGCTGTGATCTCAATCCTAGAGATTTTATTGTGGAATAA

Upstream 100 bases:

>100_bases
AGCCACAAATTGCGGTTTTTTCAAAAGTTTAAGCTTCTTTTTTTTTTTTTTTTGTATTTAATACTCGGTATGATTTTGAT
CTTATTTAAAAGGAATAGCT

Downstream 100 bases:

>100_bases
ACAAGCCCCCCAAAGAAATGGGGGGTTAAAAACCCTTATTTTAAAATCACTTGCCAAAAGCTTGGTGCAAATGCGTGGTG
AGAGAGTTAAGATACTGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 681; Mature: 681

Protein sequence:

>681_residues
MKATQSTVNDFFALTGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYILHWIDEEKSLRKLQEFVIID
GQQRITTLMLLLKAIETKIPNEGIKKEIDNLLNLSGQKLRLKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELD
NYISKGYRIEEIYGAFLRLKIVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQKHLYDTYWVPLENW
LGEKDLNDFIKTYLRIYFEDKVKEGEREVYYVLKDHHRKNFPNDIQGLMSDMREYGRIYQIFLDRDHHFLERGNPQQLAN
LRLRIKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFYEILQILISYFVRRSVCGDPTGTLNKVLYSLYRQLENVSADAF
KRYLGKSVGQMAFPNDDKIKAAFAVRNAYSANQACKFILLEIEKLSNAEPPKEENLEVEHFYPQTPTQEWRDRVGDYFTF
EQDYLNNFGNLTLSGQNQKLGNKPYEAKIELMEQHSSLHLNDYFINNTHSWGIEEVKARSEYLADQFCQVELFKDLPKEY
RTRKISKTLDDDLTFHNLQSVKLPNNEKRLAKNAEGLVKAVINYLLENAREAFESYTDEAQRYIYWDKAKAQLRDRDGTL
VVPFEKYGFYFVSGASLQNVGNNLRDLILGCDLNPRDFIVE

Sequences:

>Translated_681_residues
MKATQSTVNDFFALTGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYILHWIDEEKSLRKLQEFVIID
GQQRITTLMLLLKAIETKIPNEGIKKEIDNLLNLSGQKLRLKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELD
NYISKGYRIEEIYGAFLRLKIVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQKHLYDTYWVPLENW
LGEKDLNDFIKTYLRIYFEDKVKEGEREVYYVLKDHHRKNFPNDIQGLMSDMREYGRIYQIFLDRDHHFLERGNPQQLAN
LRLRIKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFYEILQILISYFVRRSVCGDPTGTLNKVLYSLYRQLENVSADAF
KRYLGKSVGQMAFPNDDKIKAAFAVRNAYSANQACKFILLEIEKLSNAEPPKEENLEVEHFYPQTPTQEWRDRVGDYFTF
EQDYLNNFGNLTLSGQNQKLGNKPYEAKIELMEQHSSLHLNDYFINNTHSWGIEEVKARSEYLADQFCQVELFKDLPKEY
RTRKISKTLDDDLTFHNLQSVKLPNNEKRLAKNAEGLVKAVINYLLENAREAFESYTDEAQRYIYWDKAKAQLRDRDGTL
VVPFEKYGFYFVSGASLQNVGNNLRDLILGCDLNPRDFIVE
>Mature_681_residues
MKATQSTVNDFFALTGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYILHWIDEEKSLRKLQEFVIID
GQQRITTLMLLLKAIETKIPNEGIKKEIDNLLNLSGQKLRLKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELD
NYISKGYRIEEIYGAFLRLKIVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQKHLYDTYWVPLENW
LGEKDLNDFIKTYLRIYFEDKVKEGEREVYYVLKDHHRKNFPNDIQGLMSDMREYGRIYQIFLDRDHHFLERGNPQQLAN
LRLRIKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFYEILQILISYFVRRSVCGDPTGTLNKVLYSLYRQLENVSADAF
KRYLGKSVGQMAFPNDDKIKAAFAVRNAYSANQACKFILLEIEKLSNAEPPKEENLEVEHFYPQTPTQEWRDRVGDYFTF
EQDYLNNFGNLTLSGQNQKLGNKPYEAKIELMEQHSSLHLNDYFINNTHSWGIEEVKARSEYLADQFCQVELFKDLPKEY
RTRKISKTLDDDLTFHNLQSVKLPNNEKRLAKNAEGLVKAVINYLLENAREAFESYTDEAQRYIYWDKAKAQLRDRDGTL
VVPFEKYGFYFVSGASLQNVGNNLRDLILGCDLNPRDFIVE

Specific function: Unknown

COG id: COG1479

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79843; Mature: 79843

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATQSTVNDFFALTGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYI
CCCCHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LHWIDEEKSLRKLQEFVIIDGQQRITTLMLLLKAIETKIPNEGIKKEIDNLLNLSGQKLR
HHHHCCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEE
LKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELDNYISKGYRIEEIYGAFLRLK
EECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQKHLYDTYWVPLENW
HHEEEHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHEEEEHHHH
LGEKDLNDFIKTYLRIYFEDKVKEGEREVYYVLKDHHRKNFPNDIQGLMSDMREYGRIYQ
CCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHEE
IFLDRDHHFLERGNPQQLANLRLRIKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFYEI
HHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH
LQILISYFVRRSVCGDPTGTLNKVLYSLYRQLENVSADAFKRYLGKSVGQMAFPNDDKIK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHH
AAFAVRNAYSANQACKFILLEIEKLSNAEPPKEENLEVEHFYPQTPTQEWRDRVGDYFTF
HHHHHHHHHCHHHHHHHHHEEHHHHCCCCCCCHHCCEEEEECCCCCCHHHHHHCCCCEEE
EQDYLNNFGNLTLSGQNQKLGNKPYEAKIELMEQHSSLHLNDYFINNTHSWGIEEVKARS
CHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHH
EYLADQFCQVELFKDLPKEYRTRKISKTLDDDLTFHNLQSVKLPNNEKRLAKNAEGLVKA
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHCCCEECCCCCHHHHHHHHHHHHHH
VINYLLENAREAFESYTDEAQRYIYWDKAKAQLRDRDGTLVVPFEKYGFYFVSGASLQNV
HHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHCCCCCEEEEEHHCCEEEEECCCHHHH
GNNLRDLILGCDLNPRDFIVE
CCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKATQSTVNDFFALTGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYI
CCCCHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LHWIDEEKSLRKLQEFVIIDGQQRITTLMLLLKAIETKIPNEGIKKEIDNLLNLSGQKLR
HHHHCCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEE
LKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELDNYISKGYRIEEIYGAFLRLK
EECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQKHLYDTYWVPLENW
HHEEEHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHEEEEHHHH
LGEKDLNDFIKTYLRIYFEDKVKEGEREVYYVLKDHHRKNFPNDIQGLMSDMREYGRIYQ
CCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHEE
IFLDRDHHFLERGNPQQLANLRLRIKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFYEI
HHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH
LQILISYFVRRSVCGDPTGTLNKVLYSLYRQLENVSADAFKRYLGKSVGQMAFPNDDKIK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHH
AAFAVRNAYSANQACKFILLEIEKLSNAEPPKEENLEVEHFYPQTPTQEWRDRVGDYFTF
HHHHHHHHHCHHHHHHHHHEEHHHHCCCCCCCHHCCEEEEECCCCCCHHHHHHCCCCEEE
EQDYLNNFGNLTLSGQNQKLGNKPYEAKIELMEQHSSLHLNDYFINNTHSWGIEEVKARS
CHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHH
EYLADQFCQVELFKDLPKEYRTRKISKTLDDDLTFHNLQSVKLPNNEKRLAKNAEGLVKA
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHCCCEECCCCCHHHHHHHHHHHHHH
VINYLLENAREAFESYTDEAQRYIYWDKAKAQLRDRDGTLVVPFEKYGFYFVSGASLQNV
HHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHCCCCCEEEEEHHCCEEEEECCCHHHH
GNNLRDLILGCDLNPRDFIVE
CCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA