| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527522
Identifier: 188527522
GI number: 188527522
Start: 713397
End: 715442
Strand: Reverse
Name: 188527522
Synonym: HPSH_03720
Alternate gene names: NA
Gene position: 715442-713397 (Counterclockwise)
Preceding gene: 188527523
Following gene: 188527520
Centisome position: 44.48
GC content: 39.88
Gene sequence:
>2046_bases ATGAAAGCAACACAAAGCACCGTTAACGACTTTTTTGCCCTAACAGGCACGATCTTTTCTATCCCTGTATACCAGAGGAA CTACACTTGGGAAGAAGAAAATTGTGAAAAATTACTGCAAGATATTGTCAGTATTTCTCAAAATAAGAAAACGCATTTCA TGGGTTCTATCACTTATATTTTGCATTGGATTGATGAAGAAAAGAGCTTAAGAAAACTGCAAGAATTTGTCATCATTGAC GGGCAGCAAAGGATTACCACTCTCATGCTTTTGCTCAAAGCCATAGAAACAAAGATACCAAATGAAGGGATAAAAAAAGA GATTGATAATCTACTCAATCTTTCGGGACAAAAGTTGCGTCTCAAACCCATTAAAAGCGACAAAGAAGCCTTTGATTTGG TCATGCAGAATCGATCGCATGAGATACAAGGCGTATCACACATTAGGAATAATTATAAATTTTTCACCAAAGAGCTTGAC AATTATATCAGCAAAGGGTATCGCATAGAAGAGATTTATGGGGCGTTTTTGCGGCTTAAAATCGTAGCCATAGGCTTAGA GTTGGGCGAAGACGATCCGCAAGTGGTGTTTGAGAGCATCAACGCTACAGGCGTGCAATTAAAAGGGCTAGATCTCATAC GCAACTATCTGATGATGGGGGAAAATTCTGAAAAACAAAAACATCTCTATGATACTTATTGGGTTCCTTTAGAAAATTGG CTTGGTGAAAAGGATTTGAATGATTTTATCAAAACCTACCTGAGAATCTATTTTGAAGATAAAGTAAAAGAGGGAGAGCG CGAAGTGTATTACGTGCTAAAAGACCACCACAGAAAAAATTTCCCTAACGATATACAAGGTCTTATGAGCGATATGCGAG AGTATGGCAGAATCTATCAAATCTTTTTAGACAGAGATCACCATTTTTTAGAGCGTGGAAACCCGCAGCAGTTAGCGAAT TTACGCCTGCGCATTAAAGATCTCGTAAAAATCAAATTTGGCGTGGCAAAGCCCTTTGTTTTGCGTTGCGCCAGAGATTT TGAAGAAGGCAAGCTGGATTATGAAAATTTCTACGAAATTTTGCAAATCCTTATCAGCTACTTCGTGCGCAGGAGCGTGT GCGGAGATCCTACCGGCACGCTTAACAAAGTTCTTTATTCTTTATACAGACAGCTAGAAAATGTTTCAGCCGATGCATTC AAGCGGTATCTGGGCAAGAGCGTTGGTCAAATGGCGTTCCCCAATGACGATAAAATTAAAGCGGCGTTTGCTGTTCGTAA CGCTTATTCAGCAAATCAAGCGTGCAAATTCATCCTGCTTGAGATAGAAAAATTAAGTAACGCCGAACCGCCAAAAGAAG AGAATTTAGAAGTAGAGCATTTCTACCCCCAAACCCCCACACAAGAATGGCGTGATAGGGTGGGGGACTATTTCACTTTT GAGCAAGACTACCTCAATAATTTTGGGAATCTGACCTTATCAGGGCAAAATCAAAAGCTTGGCAACAAACCTTACGAGGC AAAAATAGAGCTTATGGAACAACACAGCTCCTTGCATTTGAACGACTATTTCATCAACAACACCCATTCTTGGGGGATAG AGGAAGTGAAGGCTAGGAGCGAATATTTAGCGGATCAATTTTGTCAAGTGGAATTGTTTAAAGATCTGCCCAAAGAATAC CGCACCAGAAAGATCAGTAAAACGCTTGATGATGACTTAACTTTCCATAATCTTCAAAGCGTTAAGCTCCCCAATAATGA GAAGCGTTTGGCAAAAAACGCTGAAGGGTTGGTGAAAGCTGTCATAAACTACTTATTAGAAAATGCCAGAGAGGCCTTTG AAAGCTACACGGATGAAGCTCAAAGATACATTTATTGGGATAAAGCAAAAGCGCAATTAAGGGATAGAGATGGCACTCTT GTTGTGCCTTTTGAAAAATACGGATTCTACTTTGTCAGTGGCGCGAGTCTTCAAAATGTGGGCAATAACCTTAGGGATCT TATCTTAGGCTGTGATCTCAATCCTAGAGATTTTATTGTGGAATAA
Upstream 100 bases:
>100_bases AGCCACAAATTGCGGTTTTTTCAAAAGTTTAAGCTTCTTTTTTTTTTTTTTTTGTATTTAATACTCGGTATGATTTTGAT CTTATTTAAAAGGAATAGCT
Downstream 100 bases:
>100_bases ACAAGCCCCCCAAAGAAATGGGGGGTTAAAAACCCTTATTTTAAAATCACTTGCCAAAAGCTTGGTGCAAATGCGTGGTG AGAGAGTTAAGATACTGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 681; Mature: 681
Protein sequence:
>681_residues MKATQSTVNDFFALTGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYILHWIDEEKSLRKLQEFVIID GQQRITTLMLLLKAIETKIPNEGIKKEIDNLLNLSGQKLRLKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELD NYISKGYRIEEIYGAFLRLKIVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQKHLYDTYWVPLENW LGEKDLNDFIKTYLRIYFEDKVKEGEREVYYVLKDHHRKNFPNDIQGLMSDMREYGRIYQIFLDRDHHFLERGNPQQLAN LRLRIKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFYEILQILISYFVRRSVCGDPTGTLNKVLYSLYRQLENVSADAF KRYLGKSVGQMAFPNDDKIKAAFAVRNAYSANQACKFILLEIEKLSNAEPPKEENLEVEHFYPQTPTQEWRDRVGDYFTF EQDYLNNFGNLTLSGQNQKLGNKPYEAKIELMEQHSSLHLNDYFINNTHSWGIEEVKARSEYLADQFCQVELFKDLPKEY RTRKISKTLDDDLTFHNLQSVKLPNNEKRLAKNAEGLVKAVINYLLENAREAFESYTDEAQRYIYWDKAKAQLRDRDGTL VVPFEKYGFYFVSGASLQNVGNNLRDLILGCDLNPRDFIVE
Sequences:
>Translated_681_residues MKATQSTVNDFFALTGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYILHWIDEEKSLRKLQEFVIID GQQRITTLMLLLKAIETKIPNEGIKKEIDNLLNLSGQKLRLKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELD NYISKGYRIEEIYGAFLRLKIVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQKHLYDTYWVPLENW LGEKDLNDFIKTYLRIYFEDKVKEGEREVYYVLKDHHRKNFPNDIQGLMSDMREYGRIYQIFLDRDHHFLERGNPQQLAN LRLRIKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFYEILQILISYFVRRSVCGDPTGTLNKVLYSLYRQLENVSADAF KRYLGKSVGQMAFPNDDKIKAAFAVRNAYSANQACKFILLEIEKLSNAEPPKEENLEVEHFYPQTPTQEWRDRVGDYFTF EQDYLNNFGNLTLSGQNQKLGNKPYEAKIELMEQHSSLHLNDYFINNTHSWGIEEVKARSEYLADQFCQVELFKDLPKEY RTRKISKTLDDDLTFHNLQSVKLPNNEKRLAKNAEGLVKAVINYLLENAREAFESYTDEAQRYIYWDKAKAQLRDRDGTL VVPFEKYGFYFVSGASLQNVGNNLRDLILGCDLNPRDFIVE >Mature_681_residues MKATQSTVNDFFALTGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYILHWIDEEKSLRKLQEFVIID GQQRITTLMLLLKAIETKIPNEGIKKEIDNLLNLSGQKLRLKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELD NYISKGYRIEEIYGAFLRLKIVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQKHLYDTYWVPLENW LGEKDLNDFIKTYLRIYFEDKVKEGEREVYYVLKDHHRKNFPNDIQGLMSDMREYGRIYQIFLDRDHHFLERGNPQQLAN LRLRIKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFYEILQILISYFVRRSVCGDPTGTLNKVLYSLYRQLENVSADAF KRYLGKSVGQMAFPNDDKIKAAFAVRNAYSANQACKFILLEIEKLSNAEPPKEENLEVEHFYPQTPTQEWRDRVGDYFTF EQDYLNNFGNLTLSGQNQKLGNKPYEAKIELMEQHSSLHLNDYFINNTHSWGIEEVKARSEYLADQFCQVELFKDLPKEY RTRKISKTLDDDLTFHNLQSVKLPNNEKRLAKNAEGLVKAVINYLLENAREAFESYTDEAQRYIYWDKAKAQLRDRDGTL VVPFEKYGFYFVSGASLQNVGNNLRDLILGCDLNPRDFIVE
Specific function: Unknown
COG id: COG1479
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79843; Mature: 79843
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKATQSTVNDFFALTGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYI CCCCHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LHWIDEEKSLRKLQEFVIIDGQQRITTLMLLLKAIETKIPNEGIKKEIDNLLNLSGQKLR HHHHCCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEE LKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELDNYISKGYRIEEIYGAFLRLK EECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH IVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQKHLYDTYWVPLENW HHEEEHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHEEEEHHHH LGEKDLNDFIKTYLRIYFEDKVKEGEREVYYVLKDHHRKNFPNDIQGLMSDMREYGRIYQ CCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHEE IFLDRDHHFLERGNPQQLANLRLRIKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFYEI HHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH LQILISYFVRRSVCGDPTGTLNKVLYSLYRQLENVSADAFKRYLGKSVGQMAFPNDDKIK HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHH AAFAVRNAYSANQACKFILLEIEKLSNAEPPKEENLEVEHFYPQTPTQEWRDRVGDYFTF HHHHHHHHHCHHHHHHHHHEEHHHHCCCCCCCHHCCEEEEECCCCCCHHHHHHCCCCEEE EQDYLNNFGNLTLSGQNQKLGNKPYEAKIELMEQHSSLHLNDYFINNTHSWGIEEVKARS CHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHH EYLADQFCQVELFKDLPKEYRTRKISKTLDDDLTFHNLQSVKLPNNEKRLAKNAEGLVKA HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHCCCEECCCCCHHHHHHHHHHHHHH VINYLLENAREAFESYTDEAQRYIYWDKAKAQLRDRDGTLVVPFEKYGFYFVSGASLQNV HHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHCCCCCEEEEEHHCCEEEEECCCHHHH GNNLRDLILGCDLNPRDFIVE CCHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKATQSTVNDFFALTGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYI CCCCHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LHWIDEEKSLRKLQEFVIIDGQQRITTLMLLLKAIETKIPNEGIKKEIDNLLNLSGQKLR HHHHCCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEE LKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELDNYISKGYRIEEIYGAFLRLK EECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH IVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSEKQKHLYDTYWVPLENW HHEEEHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHEEEEHHHH LGEKDLNDFIKTYLRIYFEDKVKEGEREVYYVLKDHHRKNFPNDIQGLMSDMREYGRIYQ CCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHEE IFLDRDHHFLERGNPQQLANLRLRIKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFYEI HHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH LQILISYFVRRSVCGDPTGTLNKVLYSLYRQLENVSADAFKRYLGKSVGQMAFPNDDKIK HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHH AAFAVRNAYSANQACKFILLEIEKLSNAEPPKEENLEVEHFYPQTPTQEWRDRVGDYFTF HHHHHHHHHCHHHHHHHHHEEHHHHCCCCCCCHHCCEEEEECCCCCCHHHHHHCCCCEEE EQDYLNNFGNLTLSGQNQKLGNKPYEAKIELMEQHSSLHLNDYFINNTHSWGIEEVKARS CHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHH EYLADQFCQVELFKDLPKEYRTRKISKTLDDDLTFHNLQSVKLPNNEKRLAKNAEGLVKA HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHCCCEECCCCCHHHHHHHHHHHHHH VINYLLENAREAFESYTDEAQRYIYWDKAKAQLRDRDGTLVVPFEKYGFYFVSGASLQNV HHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHCCCCCEEEEEHHCCEEEEECCCHHHH GNNLRDLILGCDLNPRDFIVE CCHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA