| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527269
Identifier: 188527269
GI number: 188527269
Start: 459579
End: 459842
Strand: Direct
Name: 188527269
Synonym: HPSH_02380
Alternate gene names: NA
Gene position: 459579-459842 (Clockwise)
Preceding gene: 188527268
Following gene: 188527270
Centisome position: 28.57
GC content: 27.27
Gene sequence:
>264_bases ATGTTTGATAATAACGATTTTAAAGGTTATAGAAATTTATTGGGTTTTAATTCTCAAAATACATTTAAGGAATTTTTAGG CGCTAAAGACATACAACCTTGCGTTGATTTCAATTATTTAAACGCGCTCAAAAAAAGGCTTATTGAAATTTTTAGCGCTA TCAATAGTGTTTATTGTTTTAAATATAATGAGTATGAATTGGAATGCTTTTTTAAAAACTCCATAGAGCGAGTGTTTTCA AGGCTATACTCATGTTGTTTATAA
Upstream 100 bases:
>100_bases GGAGCACTAGCGCTAAAAGATTGCAAATTGGCAATGCCGTGCCGCCTTTATTGAGTGTAGCGCTCGCTCATGCGGTTTTT GATTTTTTAAAGGGGTAAAA
Downstream 100 bases:
>100_bases GCTGAATAATCAAGGCAGAAGGCCTGAAGAAGTGTGTTTTTCTTGGATGCGTGGGTTTTTAGTAGCGGAGTTTTTTAAGG GTTTTATCGCTTGTCTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 87; Mature: 87
Protein sequence:
>87_residues MFDNNDFKGYRNLLGFNSQNTFKEFLGAKDIQPCVDFNYLNALKKRLIEIFSAINSVYCFKYNEYELECFFKNSIERVFS RLYSCCL
Sequences:
>Translated_87_residues MFDNNDFKGYRNLLGFNSQNTFKEFLGAKDIQPCVDFNYLNALKKRLIEIFSAINSVYCFKYNEYELECFFKNSIERVFS RLYSCCL >Mature_87_residues MFDNNDFKGYRNLLGFNSQNTFKEFLGAKDIQPCVDFNYLNALKKRLIEIFSAINSVYCFKYNEYELECFFKNSIERVFS RLYSCCL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10404; Mature: 10404
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 5.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDNNDFKGYRNLLGFNSQNTFKEFLGAKDIQPCVDFNYLNALKKRLIEIFSAINSVYCF CCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHC KYNEYELECFFKNSIERVFSRLYSCCL CCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFDNNDFKGYRNLLGFNSQNTFKEFLGAKDIQPCVDFNYLNALKKRLIEIFSAINSVYCF CCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHC KYNEYELECFFKNSIERVFSRLYSCCL CCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA