| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is thrB [H]
Identifier: 188527207
GI number: 188527207
Start: 392871
End: 393752
Strand: Direct
Name: thrB [H]
Synonym: HPSH_02070
Alternate gene names: 188527207
Gene position: 392871-393752 (Clockwise)
Preceding gene: 188527206
Following gene: 188527208
Centisome position: 24.42
GC content: 42.06
Gene sequence:
>882_bases TTGGTAGTGAGTGTTCCTGCAACAAGTGCGAATTTAGGCCCCGGTTTTGATTGCTTGGGTTTGAGCTTGAATTTACGCAA TCGTTTTTTTATTGAGCCTAGCAGTTTTCATGCGGTGAAATTGGTTGGGGAGGGTGAAGGGATCCCTAAGTTTTTAACCA ACAATATTTTCACTAGAGTGTTTTATGAGATTTTAAAAAAGCATGGGAATGACGGCTCATTTAAATTTTTATTGCATAAT AAAGTCCCTATTACAAGGGGCATGGGGTCTAGCTCGGCGATGATTGTGGGGGCGGTCGCTTCAGCGTTTGCGTTTTTAGG GTTTGCTTTTGATAGAGAAAACATTGTCAATACCGCTTTAATTTATGAAAACCACCCGGATAATATCACCCCGGCGGTGT TTGGGGGGTATAATGCAGCGTTTGTGGAAAAAAAGAAAGTGATAAGTTTGAAAACCACAGTCCCTTCTTTTTTAAAAGCG GTGATGGTGATCCCTAATAGGGCCATTTCTACCAAGCAATCGCGCCATCTCTTGCCCAAGCGTTACAGTGTGCAAGAAAG CGTGTTTAACCTTTCGCATGCGAGCTTGATGACGATGGCGATTGTGCAGGGTAAGTGGGATTTATTGCGTTGTTGCTCTA AAGACAGGATGCATCAATATAAGCGCATGCAAACTTATCCCGTGTTGTTTGCGATCCAAAAGCTCGCTTTAGAAAATAAC GCCTTAATGAGCACGCTTTCAGGGAGCGGTTCGTCGTTTTTTAACATGTGTTATGAAGAGGACGCTCCTAAATTAAAGCA GGTTTTGAGCAAGAAATTCCCTAAATTTAGGGTAGCGGTTTTAGATTTTGATAATGATGGAGTCCTTATTGAGAAAGACT GA
Upstream 100 bases:
>100_bases ATTCACCCAATTGAACACGCCGTTTTACATTTTGCCTCCTATTTAGTGTATAATGCTAGTTTTAAAAAATGAAAGGGTAT CAACAATAGGGGTTTAAAAT
Downstream 100 bases:
>100_bases AATTAAAATCCGCATGTGTGTGGCGTGCAGAATACGCCAACCTCAAAAGGATTTGTTGCGTTTGAAAAGCTTTGAAAATC AAATCATGGAATTTGATGGC
Product: homoserine kinase
Products: NA
Alternate protein names: HK; HSK [H]
Number of amino acids: Translated: 293; Mature: 293
Protein sequence:
>293_residues MVVSVPATSANLGPGFDCLGLSLNLRNRFFIEPSSFHAVKLVGEGEGIPKFLTNNIFTRVFYEILKKHGNDGSFKFLLHN KVPITRGMGSSSAMIVGAVASAFAFLGFAFDRENIVNTALIYENHPDNITPAVFGGYNAAFVEKKKVISLKTTVPSFLKA VMVIPNRAISTKQSRHLLPKRYSVQESVFNLSHASLMTMAIVQGKWDLLRCCSKDRMHQYKRMQTYPVLFAIQKLALENN ALMSTLSGSGSSFFNMCYEEDAPKLKQVLSKKFPKFRVAVLDFDNDGVLIEKD
Sequences:
>Translated_293_residues MVVSVPATSANLGPGFDCLGLSLNLRNRFFIEPSSFHAVKLVGEGEGIPKFLTNNIFTRVFYEILKKHGNDGSFKFLLHN KVPITRGMGSSSAMIVGAVASAFAFLGFAFDRENIVNTALIYENHPDNITPAVFGGYNAAFVEKKKVISLKTTVPSFLKA VMVIPNRAISTKQSRHLLPKRYSVQESVFNLSHASLMTMAIVQGKWDLLRCCSKDRMHQYKRMQTYPVLFAIQKLALENN ALMSTLSGSGSSFFNMCYEEDAPKLKQVLSKKFPKFRVAVLDFDNDGVLIEKD >Mature_293_residues MVVSVPATSANLGPGFDCLGLSLNLRNRFFIEPSSFHAVKLVGEGEGIPKFLTNNIFTRVFYEILKKHGNDGSFKFLLHN KVPITRGMGSSSAMIVGAVASAFAFLGFAFDRENIVNTALIYENHPDNITPAVFGGYNAAFVEKKKVISLKTTVPSFLKA VMVIPNRAISTKQSRHLLPKRYSVQESVFNLSHASLMTMAIVQGKWDLLRCCSKDRMHQYKRMQTYPVLFAIQKLALENN ALMSTLSGSGSSFFNMCYEEDAPKLKQVLSKKFPKFRVAVLDFDNDGVLIEKD
Specific function: Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate [H]
COG id: COG0083
COG function: function code E; Homoserine kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GHMP kinase family. Homoserine kinase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786184, Length=287, Percent_Identity=24.390243902439, Blast_Score=82, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6321814, Length=351, Percent_Identity=26.7806267806268, Blast_Score=111, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006204 - InterPro: IPR006203 - InterPro: IPR000870 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF00288 GHMP_kinases_N [H]
EC number: =2.7.1.39 [H]
Molecular weight: Translated: 32606; Mature: 32606
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: PS00627 GHMP_KINASES_ATP ; PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVSVPATSANLGPGFDCLGLSLNLRNRFFIEPSSFHAVKLVGEGEGIPKFLTNNIFTRV CEEECCCCCCCCCCCCEEEEEEEECCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHH FYEILKKHGNDGSFKFLLHNKVPITRGMGSSSAMIVGAVASAFAFLGFAFDRENIVNTAL HHHHHHHHCCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHEEEE IYENHPDNITPAVFGGYNAAFVEKKKVISLKTTVPSFLKAVMVIPNRAISTKQSRHLLPK EEECCCCCCCCCEECCCCEEEECCCCEEEEEHHHHHHHHHHHHCCCCCCCCCHHHCCCCC RYSVQESVFNLSHASLMTMAIVQGKWDLLRCCSKDRMHQYKRMQTYPVLFAIQKLALENN HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC ALMSTLSGSGSSFFNMCYEEDAPKLKQVLSKKFPKFRVAVLDFDNDGVLIEKD HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCEEEECC >Mature Secondary Structure MVVSVPATSANLGPGFDCLGLSLNLRNRFFIEPSSFHAVKLVGEGEGIPKFLTNNIFTRV CEEECCCCCCCCCCCCEEEEEEEECCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHH FYEILKKHGNDGSFKFLLHNKVPITRGMGSSSAMIVGAVASAFAFLGFAFDRENIVNTAL HHHHHHHHCCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHEEEE IYENHPDNITPAVFGGYNAAFVEKKKVISLKTTVPSFLKAVMVIPNRAISTKQSRHLLPK EEECCCCCCCCCEECCCCEEEECCCCEEEEEHHHHHHHHHHHHCCCCCCCCCHHHCCCCC RYSVQESVFNLSHASLMTMAIVQGKWDLLRCCSKDRMHQYKRMQTYPVLFAIQKLALENN HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC ALMSTLSGSGSSFFNMCYEEDAPKLKQVLSKKFPKFRVAVLDFDNDGVLIEKD HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]