| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527150
Identifier: 188527150
GI number: 188527150
Start: 334789
End: 335574
Strand: Direct
Name: 188527150
Synonym: HPSH_01785
Alternate gene names: NA
Gene position: 334789-335574 (Clockwise)
Preceding gene: 188527149
Following gene: 188527151
Centisome position: 20.81
GC content: 40.46
Gene sequence:
>786_bases ATGTTTTGTTGTTTTAAAAACATTCTGTATGCAAGCGTGATTGTGGGGGTGTTGTTGGGTTTGTGGCGTTTGACTTACGA TAAGTTCTGCTCCTCGTTGCTCTTTGTGTTGCTGATACTAGGGATTGTCGCTTACAGCTATATTTCTTTAAAAATGCATC AGAGGAAGTGCTTCGCCAAGTGTTTTGTGAATAAAAAATCCTGTTTGTCCAAGATGCTACTCTCCCCAATAATGGTGTCT TGTTTTTATGTTATTTTTTCAATTTTCACATCCGTATCCATCGCCTATAGCGTGCTGGACTATAATTGGATGATGTGGGG GCTTGTTTTTTGCACTATCGTTGTTTGCGCTGCGGTGTTTGGCGTGTTTGAAAAGATGCTCAAGAATATCATCAAAGAAG ATTATTTGATGCTGATGTCTAGAGAAGCGAGCTCTTCTATAGGGGCTCTTTTCTTCGTTGTCTTGAGTTGCTATGTGATT TTTCATGGCAACATACCCGGTTATTTGAAACCAGCTTTGATAGACACTATTAAGGCAGCGAGTGATTCCATCTATTCTAG CTGCGACTACATGGATTATTTTTTGAAGGCTAGAAAGATGTTAGAGGGGTTTGCTTGGTGGGGCATGTTCAAAGCAGAGA GCATGGGCATGAATAAGGGATTTATGGTTGCGGGCTGGGTAGTGTTTATCATCTATAACGCTCTTAGTGGGATAGCCATC AGCAGGTTGAGCGCTCAAATCATTTATTGTTTATCAAAATATTTTAGGGGTGAGTGTGGAAAATGA
Upstream 100 bases:
>100_bases TATATTCTCACTATCCTTGATACTGGTAGCGTTTAAGATCTTTCTCCTCAAAGATAACCCTAACAAACGCATCAAAAAAC AATAAGAGGGATAAAAGATA
Downstream 100 bases:
>100_bases TGTTAAAGAAGATCTAGAGCAAGCAAGACCAAAGCAAGAGCTAGAAAAACAAAAGCAAGAGTTAGAAAAGCTAACACAAG AAAAAGAACAAGAGATTATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MFCCFKNILYASVIVGVLLGLWRLTYDKFCSSLLFVLLILGIVAYSYISLKMHQRKCFAKCFVNKKSCLSKMLLSPIMVS CFYVIFSIFTSVSIAYSVLDYNWMMWGLVFCTIVVCAAVFGVFEKMLKNIIKEDYLMLMSREASSSIGALFFVVLSCYVI FHGNIPGYLKPALIDTIKAASDSIYSSCDYMDYFLKARKMLEGFAWWGMFKAESMGMNKGFMVAGWVVFIIYNALSGIAI SRLSAQIIYCLSKYFRGECGK
Sequences:
>Translated_261_residues MFCCFKNILYASVIVGVLLGLWRLTYDKFCSSLLFVLLILGIVAYSYISLKMHQRKCFAKCFVNKKSCLSKMLLSPIMVS CFYVIFSIFTSVSIAYSVLDYNWMMWGLVFCTIVVCAAVFGVFEKMLKNIIKEDYLMLMSREASSSIGALFFVVLSCYVI FHGNIPGYLKPALIDTIKAASDSIYSSCDYMDYFLKARKMLEGFAWWGMFKAESMGMNKGFMVAGWVVFIIYNALSGIAI SRLSAQIIYCLSKYFRGECGK >Mature_261_residues MFCCFKNILYASVIVGVLLGLWRLTYDKFCSSLLFVLLILGIVAYSYISLKMHQRKCFAKCFVNKKSCLSKMLLSPIMVS CFYVIFSIFTSVSIAYSVLDYNWMMWGLVFCTIVVCAAVFGVFEKMLKNIIKEDYLMLMSREASSSIGALFFVVLSCYVI FHGNIPGYLKPALIDTIKAASDSIYSSCDYMDYFLKARKMLEGFAWWGMFKAESMGMNKGFMVAGWVVFIIYNALSGIAI SRLSAQIIYCLSKYFRGECGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29633; Mature: 29633
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.0 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 10.7 %Cys+Met (Translated Protein) 5.0 %Cys (Mature Protein) 5.7 %Met (Mature Protein) 10.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFCCFKNILYASVIVGVLLGLWRLTYDKFCSSLLFVLLILGIVAYSYISLKMHQRKCFAK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CFVNKKSCLSKMLLSPIMVSCFYVIFSIFTSVSIAYSVLDYNWMMWGLVFCTIVVCAAVF HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVFEKMLKNIIKEDYLMLMSREASSSIGALFFVVLSCYVIFHGNIPGYLKPALIDTIKAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SDSIYSSCDYMDYFLKARKMLEGFAWWGMFKAESMGMNKGFMVAGWVVFIIYNALSGIAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH SRLSAQIIYCLSKYFRGECGK HHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MFCCFKNILYASVIVGVLLGLWRLTYDKFCSSLLFVLLILGIVAYSYISLKMHQRKCFAK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CFVNKKSCLSKMLLSPIMVSCFYVIFSIFTSVSIAYSVLDYNWMMWGLVFCTIVVCAAVF HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVFEKMLKNIIKEDYLMLMSREASSSIGALFFVVLSCYVIFHGNIPGYLKPALIDTIKAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SDSIYSSCDYMDYFLKARKMLEGFAWWGMFKAESMGMNKGFMVAGWVVFIIYNALSGIAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH SRLSAQIIYCLSKYFRGECGK HHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA