Definition | Helicobacter pylori Shi470, complete genome. |
---|---|
Accession | NC_010698 |
Length | 1,608,548 |
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The map label for this gene is 188527132
Identifier: 188527132
GI number: 188527132
Start: 325150
End: 326022
Strand: Direct
Name: 188527132
Synonym: HPSH_01695
Alternate gene names: NA
Gene position: 325150-326022 (Clockwise)
Preceding gene: 188527131
Following gene: 188527133
Centisome position: 20.21
GC content: 35.85
Gene sequence:
>873_bases ATGCCAGTAAAAATTTTGTGCGATTGTTTTTTAACAAGCGGTTTAGGGCATGTGAGGCGTTGTGAAAAAATCCTTTCTTT TATAGAAAAATTAGGGGTTAAAGCGGATCTTTATTTATATAAGCAAAATGATATAAGCGCTTTTTTAGAGAGCGTTGGCA ATGATGATTTTTTGATTATAGATAGCTATTGTTTAAATTCAAAGGATTTTTATCTTTTAAAAGAAAAAGCCAAAAGCCTT ATGGTCATAGAAGATAAAGAGCATGCTAAGGGGTTTTACCCTAAAAACACCAAGATCATGAATTTCACGCTGAACGCTTT AAAACACTACCATTATTTATCAAAAGATTATCAGTATTATTTGGGGGTGGGGTTTTACCCTGTTGATATTCGTTTTGTCT ATGAGCGCCCTATCAATACAGAAAATAAAGAAGTGCTGATCACTCTAGGGGGGAGCGAGAAAAAAACGCTCAAAGAGATA GTCAAAATTTTAGAAAATAAGGGCATGCATTTGCATATCATTTCGCCCCATATCCCCAAAAATCCTCCCAAAAACACGCA TTATTACAGCCCTTTAAGCCCTTTGGAGTTCAGTTCTTTGATGAAATTTTGTGCTTGTGCCATTAGCGCTGCAGGCCAAA CTCTCTATGAATTAGCCCTTTCTCAAACGCCCTCTCTTATCATTCCCATCGCTTCTAATCAAATCATTCAAAGCCAAGAA TTTGAAAGCTTGGGTATTTTCAAACAAACGAGTTTGAAAACTTTAGCGAAAGATTTTGAAAATTTACAAATTCAAAAAAA TCAAGCCTGGGCAAAAAACTTGGTCTTTGGGAGTGAGCTAGAGGGCGCCTTAAGGGAGTTTTTAGAAATTTGA
Upstream 100 bases:
>100_bases ATTCTATCGCTTTAGAATTATCGCCCTTAGAAGTCCAAGATATTGACACTTTAGAAGATTTAGAATTAGCCAAGCTCAAA TACAGCCGTTTGAAAAACGC
Downstream 100 bases:
>100_bases AAAAAAATTATTCTTATGGAAATATCCAAGCGATTGATTTTGCGCACTTAAACGATGAAGAAAAGTTGTTGGTTTTAGAG TTTCGCAACCACCCAAACAC
Product: CMP-N-acetylneuraminic acid synthetase (neuA)
Products: diphosphate; CMP-N-acylneuraminate
Alternate protein names: FlmD Protein; CMP-Sialic Acid Synthetase NeuA; Glycosyltransferase
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MPVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKADLYLYKQNDISAFLESVGNDDFLIIDSYCLNSKDFYLLKEKAKSL MVIEDKEHAKGFYPKNTKIMNFTLNALKHYHYLSKDYQYYLGVGFYPVDIRFVYERPINTENKEVLITLGGSEKKTLKEI VKILENKGMHLHIISPHIPKNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLIIPIASNQIIQSQE FESLGIFKQTSLKTLAKDFENLQIQKNQAWAKNLVFGSELEGALREFLEI
Sequences:
>Translated_290_residues MPVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKADLYLYKQNDISAFLESVGNDDFLIIDSYCLNSKDFYLLKEKAKSL MVIEDKEHAKGFYPKNTKIMNFTLNALKHYHYLSKDYQYYLGVGFYPVDIRFVYERPINTENKEVLITLGGSEKKTLKEI VKILENKGMHLHIISPHIPKNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLIIPIASNQIIQSQE FESLGIFKQTSLKTLAKDFENLQIQKNQAWAKNLVFGSELEGALREFLEI >Mature_289_residues PVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKADLYLYKQNDISAFLESVGNDDFLIIDSYCLNSKDFYLLKEKAKSLM VIEDKEHAKGFYPKNTKIMNFTLNALKHYHYLSKDYQYYLGVGFYPVDIRFVYERPINTENKEVLITLGGSEKKTLKEIV KILENKGMHLHIISPHIPKNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLIIPIASNQIIQSQEF ESLGIFKQTSLKTLAKDFENLQIQKNQAWAKNLVFGSELEGALREFLEI
Specific function: Unknown
COG id: COG3980
COG function: function code M; Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.43
Molecular weight: Translated: 33140; Mature: 33009
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKADLYLYKQNDISAFLESVGNDDFLII CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCEEEE DSYCLNSKDFYLLKEKAKSLMVIEDKEHAKGFYPKNTKIMNFTLNALKHYHYLSKDYQYY EEEECCCCCEEEEECCCCCEEEEECHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEE LGVGFYPVDIRFVYERPINTENKEVLITLGGSEKKTLKEIVKILENKGMHLHIISPHIPK EECCEEEEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC NPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLIIPIASNQIIQSQE CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCC FESLGIFKQTSLKTLAKDFENLQIQKNQAWAKNLVFGSELEGALREFLEI HHHCCCHHHHHHHHHHHHHHHCEEECCHHHHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure PVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKADLYLYKQNDISAFLESVGNDDFLII CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCEEEE DSYCLNSKDFYLLKEKAKSLMVIEDKEHAKGFYPKNTKIMNFTLNALKHYHYLSKDYQYY EEEECCCCCEEEEECCCCCEEEEECHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEE LGVGFYPVDIRFVYERPINTENKEVLITLGGSEKKTLKEIVKILENKGMHLHIISPHIPK EECCEEEEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC NPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLIIPIASNQIIQSQE CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCC FESLGIFKQTSLKTLAKDFENLQIQKNQAWAKNLVFGSELEGALREFLEI HHHCCCHHHHHHHHHHHHHHHCEEECCHHHHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: CTP; N-acylneuraminate
Specific reaction: CTP + N-acylneuraminate = diphosphate + CMP-N-acylneuraminate
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA