| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527093
Identifier: 188527093
GI number: 188527093
Start: 281839
End: 282357
Strand: Direct
Name: 188527093
Synonym: HPSH_01490
Alternate gene names: NA
Gene position: 281839-282357 (Clockwise)
Preceding gene: 188527092
Following gene: 188527094
Centisome position: 17.52
GC content: 36.61
Gene sequence:
>519_bases ATGCGTTTTTTTAGTGGTTTTGGGTTCATTAATGAAAGCGTTTTGTTTGAAGAGTGGCTTTTAAAAGGGGCTTATGATGT GTCAGGCTTTTCTATGGGGGCGATTAAGGCGATAGAATACGCTTATAATGAAATCTTACAACAGCGCCGCATCAATTCTT TGTTATTGTTTTCGCCTTGCATGCTAGCGCATAAGAGTTTGGCGTTCAAACGCTTGCAACTTTCTTCGTTTCAAAAAGAC CCGCAAAGCTACATGGATAGCTTTTATCAAGAAGTGGGCTTGAGCGCTAAATTGGAGCGTTTTAAAAAAGAGGGTTCTTT AGAAGAATTGGAATTTTTATTGGATTACAAGTATAGTGATTCTACAATTAGATTTTTATTAGAAAAAGGCGTGAAGATTG AAGCGTTTATTGGGTTAAAAGACAGGATCACTGACATTCAAGCCCTGTTAGAATTTTTTACGCCTTTAATTCAAGTGTGG CAGTTTAAGGATTGTAACCATTTGTTGCAAAAATCTTAA
Upstream 100 bases:
>100_bases TAAAGCCGCAAATTGCAGCTTGCAAGCGCTTGAGCGCTCTATTATTGGAGCAAGAATATTTAGAACATTCTAATTTGTAT GATTTATTGAACGGGTGAAA
Downstream 100 bases:
>100_bases AAAAGGTGGAAGATGAAAAAATTTGGTTTAGGGGTGTATTTGCTTCTTTTAGGTATTTTGGGTGGCTCTTTGATCATTCT AGGAGCGATAGTTGCGCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 172; Mature: 172
Protein sequence:
>172_residues MRFFSGFGFINESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSPCMLAHKSLAFKRLQLSSFQKD PQSYMDSFYQEVGLSAKLERFKKEGSLEELEFLLDYKYSDSTIRFLLEKGVKIEAFIGLKDRITDIQALLEFFTPLIQVW QFKDCNHLLQKS
Sequences:
>Translated_172_residues MRFFSGFGFINESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSPCMLAHKSLAFKRLQLSSFQKD PQSYMDSFYQEVGLSAKLERFKKEGSLEELEFLLDYKYSDSTIRFLLEKGVKIEAFIGLKDRITDIQALLEFFTPLIQVW QFKDCNHLLQKS >Mature_172_residues MRFFSGFGFINESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSPCMLAHKSLAFKRLQLSSFQKD PQSYMDSFYQEVGLSAKLERFKKEGSLEELEFLLDYKYSDSTIRFLLEKGVKIEAFIGLKDRITDIQALLEFFTPLIQVW QFKDCNHLLQKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20105; Mature: 20105
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFFSGFGFINESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSPC CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLAHKSLAFKRLQLSSFQKDPQSYMDSFYQEVGLSAKLERFKKEGSLEELEFLLDYKYSD HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCC STIRFLLEKGVKIEAFIGLKDRITDIQALLEFFTPLIQVWQFKDCNHLLQKS HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC >Mature Secondary Structure MRFFSGFGFINESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSPC CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLAHKSLAFKRLQLSSFQKDPQSYMDSFYQEVGLSAKLERFKKEGSLEELEFLLDYKYSD HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCC STIRFLLEKGVKIEAFIGLKDRITDIQALLEFFTPLIQVWQFKDCNHLLQKS HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA