Click here to switch to the map view.

The map label for this gene is 188527060

Identifier: 188527060

GI number: 188527060

Start: 246479

End: 247900

Strand: Direct

Name: 188527060

Synonym: HPSH_01315

Alternate gene names: NA

Gene position: 246479-247900 (Clockwise)

Preceding gene: 188527059

Following gene: 188527061

Centisome position: 15.32

GC content: 41.7

Gene sequence:

>1422_bases
TTGAAAAACCACTCCTTTAAAAAAACGATCGCTCTTTCCTTGCTGGCGGGCATGTCTTTGTGTAACGCTGAAGAAGATGG
GGCGTTTTTTGTCATAGATTATCAAACGAGTTTGGCCAGACAGGAATTGAAAAATCCAGGCTTCACTCAAGCGCAAGAAT
TAAAGCAGTTGATTAGAGATGGGGCTGTGAGGTTGCAAACTTCTGCCATTCCCTTATCCTACTACTTGGATATTTTAGGG
AATAAAACAAAAATCCTTTTGAGTGAAAGCGTGAAAGACAATGCACAACCACCCCAAGCCTTAGTCAATTTAGAGCAATC
TCTAGGGATTTTAGGAAAGCTATTGGATCTATCCCAGCAATACGCCAATCAGGGTGTCATTAAGCCTTTGGTGGTGGATG
TAGGGAAAGAACAAATCGGTATCACTGATAGCATGCTCTCAGTGGCTCAAAACATCGTTTTAGCTTTAGGGCAAGTGGAT
TTGAGTAAAATCCAACAAAATAATAACGGACAGCTATACGAAAACATCATGAAAGTCATGCTTTTAGGTGCAGGCGGGAC
TAATGGAGCGTATAATGGCGTGACCGTGGGCGATATTGCCACTGGCATGCAAAATTTTTCTTCGCAAACGGGCTTGATAG
GGGCTAATTCTACGGTGAGCGAGCTGAACGCTTTGATTAAGAGCGGGATTTCTTTAGATCGTGAGACTTTGGGGTTGGGG
AGCTTTATTGAAAAAAATATCTGTAGCAGTGCATCGTCTTGTTTTAGTGGGAGCCAGCTTATCTATAAGAAAGGGCTAGA
TAGAACCATAAACATCATCAATACGGTCCTAGATCAGTTTGAAAATTCGGCTAGTTCTCTTTATAAGATTTCTTATATCC
CTAACCTCTTTTCGCTCAAAGATTACCAGTCAGCGAGCATGAACGGCTTTGGGGCTAAGATGGGTTATAAACAATTTTTC
ACCCATAAGAAAAATATTGGCTTAAGGTATTACGGGTTTTTGGATTATGGCTATGCGAATTTTGGCGATACGAATTTAAA
AGTGGGAGCGAATCTTGTTACTTATGGGGTAGGAACGGATTTTTTATACAATGTGTATGAACGCTCTAGAAGGAGGGAAA
GGACTACAATCGGCCTTTTCTTTGGCGCTCAAATCGCAGGGCAAACTTGGAGCACTAATGTAACGAACTTATTGAGCGGG
CAAAGGCCTGATGTCAAGTCCAGTTCGTTCCAATTCTTGTTTGATTTGGGCGTGCGCACCAACTTTGCAAAAACCAATTT
CAATAAGCACAAGCTAGACCAAGGGATAGAATTTGGGGTGAAAATCCCTATTATCGCTCATAAATATTTCGCAACCCAAG
GCTCAAGCGCGAGCTATATGAGGAATTTTAGCTTCTATGTGGGCTATTCAGTCGGTTTTTAA

Upstream 100 bases:

>100_bases
ACGCTTAATAGCAAATTAAGAATGATTATCTTAAAATTAGGGAGTTTCTTTTATGGATTAAGTAAAATCACTTATCAAAG
CCAAAGCAAAAAGGATATTT

Downstream 100 bases:

>100_bases
GGAAGGCTCTTGATGAAAAATACCAATACAAAAGAGATAAAGAATACAAGAATGAAAAAAGGTTATAGTCAATACCACGC
GCTCAAAAAAGGGCTTTTAA

Product: outer membrane protein (omp7)

Products: NA

Alternate protein names: Outer Membrane Protein HorA; Outer Membrane Protein HopQ; Outer Membrane Protein HopE; Outer Membrane Protein HopZ; Outer Membrane Protein/Porin; Outer Membrane Protein HopW Protein (; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein Adhesin; Outer Membrane Protein ,Adhesin BabA BabB; Outer Membrane Function; Adhesin; Outer Membrane Protein HopB; Outer Membrane Protein HorB; Outer Membrane Protein HopG; Outer Membrane Protein HorC; Outer Membrane Protein HorJ; Outer Membrane Protein HopD; Outer Membrane Protein HorK; Outer Membrane Protein HorF; Outer Membrane Protein HopL; Outer Membrane Protein HopC; Outer Membrane Protein,HopV BabB BabA; Outer Membrane Protein HopF

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MKNHSFKKTIALSLLAGMSLCNAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRDGAVRLQTSAIPLSYYLDILG
NKTKILLSESVKDNAQPPQALVNLEQSLGILGKLLDLSQQYANQGVIKPLVVDVGKEQIGITDSMLSVAQNIVLALGQVD
LSKIQQNNNGQLYENIMKVMLLGAGGTNGAYNGVTVGDIATGMQNFSSQTGLIGANSTVSELNALIKSGISLDRETLGLG
SFIEKNICSSASSCFSGSQLIYKKGLDRTINIINTVLDQFENSASSLYKISYIPNLFSLKDYQSASMNGFGAKMGYKQFF
THKKNIGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQTWSTNVTNLLSG
QRPDVKSSSFQFLFDLGVRTNFAKTNFNKHKLDQGIEFGVKIPIIAHKYFATQGSSASYMRNFSFYVGYSVGF

Sequences:

>Translated_473_residues
MKNHSFKKTIALSLLAGMSLCNAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRDGAVRLQTSAIPLSYYLDILG
NKTKILLSESVKDNAQPPQALVNLEQSLGILGKLLDLSQQYANQGVIKPLVVDVGKEQIGITDSMLSVAQNIVLALGQVD
LSKIQQNNNGQLYENIMKVMLLGAGGTNGAYNGVTVGDIATGMQNFSSQTGLIGANSTVSELNALIKSGISLDRETLGLG
SFIEKNICSSASSCFSGSQLIYKKGLDRTINIINTVLDQFENSASSLYKISYIPNLFSLKDYQSASMNGFGAKMGYKQFF
THKKNIGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQTWSTNVTNLLSG
QRPDVKSSSFQFLFDLGVRTNFAKTNFNKHKLDQGIEFGVKIPIIAHKYFATQGSSASYMRNFSFYVGYSVGF
>Mature_473_residues
MKNHSFKKTIALSLLAGMSLCNAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRDGAVRLQTSAIPLSYYLDILG
NKTKILLSESVKDNAQPPQALVNLEQSLGILGKLLDLSQQYANQGVIKPLVVDVGKEQIGITDSMLSVAQNIVLALGQVD
LSKIQQNNNGQLYENIMKVMLLGAGGTNGAYNGVTVGDIATGMQNFSSQTGLIGANSTVSELNALIKSGISLDRETLGLG
SFIEKNICSSASSCFSGSQLIYKKGLDRTINIINTVLDQFENSASSLYKISYIPNLFSLKDYQSASMNGFGAKMGYKQFF
THKKNIGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQTWSTNVTNLLSG
QRPDVKSSSFQFLFDLGVRTNFAKTNFNKHKLDQGIEFGVKIPIIAHKYFATQGSSASYMRNFSFYVGYSVGF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51878; Mature: 51878

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNHSFKKTIALSLLAGMSLCNAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRD
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHC
GAVRLQTSAIPLSYYLDILGNKTKILLSESVKDNAQPPQALVNLEQSLGILGKLLDLSQQ
CCEEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YANQGVIKPLVVDVGKEQIGITDSMLSVAQNIVLALGQVDLSKIQQNNNGQLYENIMKVM
HHCCCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LLGAGGTNGAYNGVTVGDIATGMQNFSSQTGLIGANSTVSELNALIKSGISLDRETLGLG
EECCCCCCCCCCCEEHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCHHHHCHH
SFIEKNICSSASSCFSGSQLIYKKGLDRTINIINTVLDQFENSASSLYKISYIPNLFSLK
HHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCCCC
DYQSASMNGFGAKMGYKQFFTHKKNIGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTD
CCCCCCCCCCCHHCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCEEEEECCCHH
FLYNVYERSRRRERTTIGLFFGAQIAGQTWSTNVTNLLSGQRPDVKSSSFQFLFDLGVRT
HHHHHHHHHHHHHCCEEEEEECCEECCCCCCCCHHHHHCCCCCCCCCCCHHEEEEECCCC
NFAKTNFNKHKLDQGIEFGVKIPIIAHKYFATQGSSASYMRNFSFYVGYSVGF
CHHHCCCCHHHHHCCCCCCEEEEEEEEEEHHCCCCCHHHHHCEEEEEEEEECC
>Mature Secondary Structure
MKNHSFKKTIALSLLAGMSLCNAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRD
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHC
GAVRLQTSAIPLSYYLDILGNKTKILLSESVKDNAQPPQALVNLEQSLGILGKLLDLSQQ
CCEEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YANQGVIKPLVVDVGKEQIGITDSMLSVAQNIVLALGQVDLSKIQQNNNGQLYENIMKVM
HHCCCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LLGAGGTNGAYNGVTVGDIATGMQNFSSQTGLIGANSTVSELNALIKSGISLDRETLGLG
EECCCCCCCCCCCEEHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCHHHHCHH
SFIEKNICSSASSCFSGSQLIYKKGLDRTINIINTVLDQFENSASSLYKISYIPNLFSLK
HHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCCCC
DYQSASMNGFGAKMGYKQFFTHKKNIGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTD
CCCCCCCCCCCHHCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCEEEEECCCHH
FLYNVYERSRRRERTTIGLFFGAQIAGQTWSTNVTNLLSGQRPDVKSSSFQFLFDLGVRT
HHHHHHHHHHHHHCCEEEEEECCEECCCCCCCCHHHHHCCCCCCCCCCCHHEEEEECCCC
NFAKTNFNKHKLDQGIEFGVKIPIIAHKYFATQGSSASYMRNFSFYVGYSVGF
CHHHCCCCHHHHHCCCCCCEEEEEEEEEEHHCCCCCHHHHHCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA