| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is 188527037
Identifier: 188527037
GI number: 188527037
Start: 226210
End: 227007
Strand: Direct
Name: 188527037
Synonym: HPSH_01200
Alternate gene names: NA
Gene position: 226210-227007 (Clockwise)
Preceding gene: 188527034
Following gene: 188527038
Centisome position: 14.06
GC content: 39.22
Gene sequence:
>798_bases ATGATATTAAGAGCGAGTGTGTTGAGCGCGTTACTTCTTGTAGGCTTAGGGGCAGCCCCTAAACATTCAGTTTCAGCTAA TGACAAACGGATGCAGGATAATTTAGTGAGCGTGATTGAAAAACAAACCAATAAAAAGGTGCGTATTTTAGAAATCAAAC CTTTAAAATCCAGCCAGGATTTAAAAATAGTCGTTATTGAAGATCCGGACACTAAATACAATATTCCGCTTGTAGTGAGT AAGGATGGTAATTTAATCATAGGGCTTAGCAATATCTTTTTTAGCAATAAAAGCGATGATGTGCAATTAGTCGCAGAAAC CAATCAAAAAGTCCAAGCCCTTAACGCTACCCAACAAAATAGCGCGAAATTGAACGCTATTTTTAATGAAATACCGGCTG ATTATGCGATAGAGTTGCCCTCTACTAACGCTGAAAATAAGGATAAAATCCTTTATATTGTTTCTGATCCCATGTGCCCG CATTGCCAAAAAGAGCTCACTAAACTCAGGGATCACTTGAAAGAAAACACCGTGAGAATGGTTGTAGTGGGGTGGCTTGG GGTCAATTCGGCTAAAAAAGCGGCTTTGATCCAAGAAGAAATGGCGAAAGCTAGGGCTAGGGGAGCGAGCGTGGAAGATA AAATCTCTATCCTTGAAAAGATTTATTCCACCCAATACGATATTAACGCTCAAAAAGAGCCTGAAGATTTACGCACTAAA GTGGAAAATACCACTAAAAAGATTTTTGAATCTGGCGTGATTAAGGGTGTGCCTTTCTTATACCATTATAAGGCATGA
Upstream 100 bases:
>100_bases TTAAGCCTTATGAAAATAGGGGATTTTTATGGTATTATACCCATTAAAAGCTTATCCCTTTTATTGTAAGGGTTTAGGCT ATTGAACTTTAGGAGTTTTA
Downstream 100 bases:
>100_bases TATAAGGCTACTCTCATGAAAAAACCCTACAGAAAGATTTCTGATTATGCGATCGTGGGTGGTTTGAGCGCGTTAGTGAT GGTAAGCATTGTGGGGTGTA
Product: hypothetical protein
Products: NA
Alternate protein names: Protein Disulphide Isomerase; Protein Disulfide Isomerase; Protein-Disulfide Isomerase
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQDLKIVVIEDPDTKYNIPLVVS KDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQNSAKLNAIFNEIPADYAIELPSTNAENKDKILYIVSDPMCP HCQKELTKLRDHLKENTVRMVVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK VENTTKKIFESGVIKGVPFLYHYKA
Sequences:
>Translated_265_residues MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQDLKIVVIEDPDTKYNIPLVVS KDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQNSAKLNAIFNEIPADYAIELPSTNAENKDKILYIVSDPMCP HCQKELTKLRDHLKENTVRMVVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK VENTTKKIFESGVIKGVPFLYHYKA >Mature_265_residues MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQDLKIVVIEDPDTKYNIPLVVS KDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQNSAKLNAIFNEIPADYAIELPSTNAENKDKILYIVSDPMCP HCQKELTKLRDHLKENTVRMVVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK VENTTKKIFESGVIKGVPFLYHYKA
Specific function: Unknown
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29499; Mature: 29499
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQD CEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC LKIVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQN EEEEEEECCCCCCCCEEEEECCCCEEEEEHHEEECCCCCCEEEEECCCCHHHHHCCCCCC SAKLNAIFNEIPADYAIELPSTNAENKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRM CHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEE VVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK EEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH VENTTKKIFESGVIKGVPFLYHYKA HHHHHHHHHHCCCCCCCCEEEEECC >Mature Secondary Structure MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQD CEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC LKIVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQN EEEEEEECCCCCCCCEEEEECCCCEEEEEHHEEECCCCCCEEEEECCCCHHHHHCCCCCC SAKLNAIFNEIPADYAIELPSTNAENKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRM CHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEE VVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK EEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH VENTTKKIFESGVIKGVPFLYHYKA HHHHHHHHHHCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA