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The map label for this gene is sodA [H]

Identifier: 187935344

GI number: 187935344

Start: 1924864

End: 1925487

Strand: Reverse

Name: sodA [H]

Synonym: CLL_A1835

Alternate gene names: 187935344

Gene position: 1925487-1924864 (Counterclockwise)

Preceding gene: 187934371

Following gene: 187934207

Centisome position: 50.67

GC content: 25.32

Gene sequence:

>624_bases
ATGATTAAAATGTTTGATAAAATAGAACTACAATATGGGTATAATGATTTAGAACCGTATATAGATGGTGAAACAATAAA
TATACATTATAATAAGCATCTTCAAACGTATGTAAATAACTTAAATAAGCTATTAGAAGGATATGAAGAACTTATAGATG
GAAAAACATTAGAGCAACTATTAGCTAATGTAGATGATTTTCCAAAAGAAATTAGACAAGATTTAATAAATCAAGGTGGA
GGAGTTGCAAATCATAATTTGTATTTTTATATATTATCTCCAAATCCTAAAAAAAACCCTGAAGGAATTTTACTATATGA
AATTAATAATAAATTTGGAGATATAGAGAATTTAAAAATTCAATTAACTAATCTTGCTATTAGCCAGTTTGGATCGGGTT
ATGGATTTTTAGTAAAAGATAGTAGAGGAAATTTATCAATTGTAAAAACCTTAAATCAAAATAGTCCCATTAGTAATGGC
TTGACTCCAATTCTATGCATAGATGTTTGGGAACATGCTTATTATTTAAAATATAAAAATTTAAGAGCAGATTATGTTAA
AAATATTTGGAACGTAATTGATTGGAGCAAAGTTCAAGGATTATACGAAAATTACGTTATTTAA

Upstream 100 bases:

>100_bases
AAATAATTATATGAATTATATGTTTGAAAGTAAATAATAAAAATAAATAAAGTTAAAATTATTTCTTAACTAAAAGTAAA
AATTAGAATACTAATATTAT

Downstream 100 bases:

>100_bases
AAGAATAGGCTATGTTTTATAACATAGCCTATTCTTTTATATTTAATAATGAACTCTAATTAACCAAAATTTCATTTTTT
TATCACTCCAACCTAAATCC

Product: Mn/Fe superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MIKMFDKIELQYGYNDLEPYIDGETINIHYNKHLQTYVNNLNKLLEGYEELIDGKTLEQLLANVDDFPKEIRQDLINQGG
GVANHNLYFYILSPNPKKNPEGILLYEINNKFGDIENLKIQLTNLAISQFGSGYGFLVKDSRGNLSIVKTLNQNSPISNG
LTPILCIDVWEHAYYLKYKNLRADYVKNIWNVIDWSKVQGLYENYVI

Sequences:

>Translated_207_residues
MIKMFDKIELQYGYNDLEPYIDGETINIHYNKHLQTYVNNLNKLLEGYEELIDGKTLEQLLANVDDFPKEIRQDLINQGG
GVANHNLYFYILSPNPKKNPEGILLYEINNKFGDIENLKIQLTNLAISQFGSGYGFLVKDSRGNLSIVKTLNQNSPISNG
LTPILCIDVWEHAYYLKYKNLRADYVKNIWNVIDWSKVQGLYENYVI
>Mature_207_residues
MIKMFDKIELQYGYNDLEPYIDGETINIHYNKHLQTYVNNLNKLLEGYEELIDGKTLEQLLANVDDFPKEIRQDLINQGG
GVANHNLYFYILSPNPKKNPEGILLYEINNKFGDIENLKIQLTNLAISQFGSGYGFLVKDSRGNLSIVKTLNQNSPISNG
LTPILCIDVWEHAYYLKYKNLRADYVKNIWNVIDWSKVQGLYENYVI

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=41.9191919191919, Blast_Score=143, Evalue=1e-34,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=41.9191919191919, Blast_Score=143, Evalue=1e-34,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=35.0253807106599, Blast_Score=110, Evalue=1e-24,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=39.4871794871795, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790342, Length=200, Percent_Identity=39.5, Blast_Score=151, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=192, Percent_Identity=37.5, Blast_Score=131, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17569479, Length=196, Percent_Identity=34.6938775510204, Blast_Score=127, Evalue=6e-30,
Organism=Saccharomyces cerevisiae, GI6321796, Length=201, Percent_Identity=38.8059701492537, Blast_Score=142, Evalue=4e-35,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=37.5634517766497, Blast_Score=127, Evalue=5e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23960; Mature: 23960

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKMFDKIELQYGYNDLEPYIDGETINIHYNKHLQTYVNNLNKLLEGYEELIDGKTLEQL
CCCCCEEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LANVDDFPKEIRQDLINQGGGVANHNLYFYILSPNPKKNPEGILLYEINNKFGDIENLKI
HHCCCHHHHHHHHHHHHCCCCEECCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEE
QLTNLAISQFGSGYGFLVKDSRGNLSIVKTLNQNSPISNGLTPILCIDVWEHAYYLKYKN
EEEEEHHHHCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHEEEEEECC
LRADYVKNIWNVIDWSKVQGLYENYVI
CHHHHHHHHHHHHCHHHHHHHHHHCCC
>Mature Secondary Structure
MIKMFDKIELQYGYNDLEPYIDGETINIHYNKHLQTYVNNLNKLLEGYEELIDGKTLEQL
CCCCCEEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LANVDDFPKEIRQDLINQGGGVANHNLYFYILSPNPKKNPEGILLYEINNKFGDIENLKI
HHCCCHHHHHHHHHHHHCCCCEECCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEE
QLTNLAISQFGSGYGFLVKDSRGNLSIVKTLNQNSPISNGLTPILCIDVWEHAYYLKYKN
EEEEEHHHHCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHEEEEEECC
LRADYVKNIWNVIDWSKVQGLYENYVI
CHHHHHHHHHHHHCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]