Click here to switch to the map view.

The map label for this gene is sorB [H]

Identifier: 187934050

GI number: 187934050

Start: 3542388

End: 3542858

Strand: Reverse

Name: sorB [H]

Synonym: CLL_A3359

Alternate gene names: 187934050

Gene position: 3542858-3542388 (Counterclockwise)

Preceding gene: 187933026

Following gene: 187935786

Centisome position: 93.23

GC content: 31.63

Gene sequence:

>471_bases
ATGTTAAATATTGTTTTAACAAGAATAGATGATAGATTAATACATGGTCAAGTAGCGACAGCTTGGTCTAAAATTACAAA
GGCAACTAAAATAATAGTAGTAGATGATGCGGTAGCACAAGATTCATTTATGGAAATGGTTTTAAAATCAGCGGCTCCAT
CTTCAATTAAAGTTGAAATATATGGAGTAAGTGATGCTGTTAATGCTTTGAATAAGGATGATGATGGAGAAAGAGTAATA
GTATTAGTTAAAACTCCAATGGTTGTACTTGATCTTGTAAAAGCTGGAGTAGGAATAAAGGAATTGAATCTTGGAGGAAT
GGGTGCAAAACAAGGTAGAAAACAATTCTATAAGAATATTTCAGTTTCAGATGAGGAAAAGGAGTCATTTAAAGAACTTA
AGGAATTAGGAGTAAACGTTTTTGTACAAATTGTCCCTGATGCAAAGCAAATCCAATTAGATAAGATATAA

Upstream 100 bases:

>100_bases
AACTGATCATTGCATTGAAATAGGAACAACAGGAATTAAAGAATTATTTAAAGAAATGGAATTATTAAAAAAATAAATAG
GTAAAAGGGAGAGGATAAAT

Downstream 100 bases:

>100_bases
TGAATATTTCAATTAAAAGTTAGAATAAGTAGTAAATAATTTTATTTATTGTAAACGTATTAATAATAAATTTTAAATAT
AAATAGGAGGAATCAGTATG

Product: PTS system sorbose subfamily IIB component

Products: NA

Alternate protein names: EIIB-Sor; EIII-B-Sor; PTS system sorbose-specific EIIB component [H]

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MLNIVLTRIDDRLIHGQVATAWSKITKATKIIVVDDAVAQDSFMEMVLKSAAPSSIKVEIYGVSDAVNALNKDDDGERVI
VLVKTPMVVLDLVKAGVGIKELNLGGMGAKQGRKQFYKNISVSDEEKESFKELKELGVNVFVQIVPDAKQIQLDKI

Sequences:

>Translated_156_residues
MLNIVLTRIDDRLIHGQVATAWSKITKATKIIVVDDAVAQDSFMEMVLKSAAPSSIKVEIYGVSDAVNALNKDDDGERVI
VLVKTPMVVLDLVKAGVGIKELNLGGMGAKQGRKQFYKNISVSDEEKESFKELKELGVNVFVQIVPDAKQIQLDKI
>Mature_156_residues
MLNIVLTRIDDRLIHGQVATAWSKITKATKIIVVDDAVAQDSFMEMVLKSAAPSSIKVEIYGVSDAVNALNKDDDGERVI
VLVKTPMVVLDLVKAGVGIKELNLGGMGAKQGRKQFYKNISVSDEEKESFKELKELGVNVFVQIVPDAKQIQLDKI

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This

COG id: COG3444

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1788120, Length=151, Percent_Identity=39.0728476821192, Blast_Score=106, Evalue=8e-25,
Organism=Escherichia coli, GI87082217, Length=156, Percent_Identity=34.6153846153846, Blast_Score=106, Evalue=8e-25,
Organism=Escherichia coli, GI1789527, Length=152, Percent_Identity=32.8947368421053, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: 220 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2880 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 260 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004720
- InterPro:   IPR018455 [H]

Pfam domain/function: PF03830 PTSIIB_sorb [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 17097; Mature: 17097

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS51101 PTS_EIIB_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIVLTRIDDRLIHGQVATAWSKITKATKIIVVDDAVAQDSFMEMVLKSAAPSSIKVEI
CCEEEEEECCCHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE
YGVSDAVNALNKDDDGERVIVLVKTPMVVLDLVKAGVGIKELNLGGMGAKQGRKQFYKNI
EECHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCC
SVSDEEKESFKELKELGVNVFVQIVPDAKQIQLDKI
CCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEECCC
>Mature Secondary Structure
MLNIVLTRIDDRLIHGQVATAWSKITKATKIIVVDDAVAQDSFMEMVLKSAAPSSIKVEI
CCEEEEEECCCHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE
YGVSDAVNALNKDDDGERVIVLVKTPMVVLDLVKAGVGIKELNLGGMGAKQGRKQFYKNI
EECHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCC
SVSDEEKESFKELKELGVNVFVQIVPDAKQIQLDKI
CCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]