| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is levR [H]
Identifier: 187934013
GI number: 187934013
Start: 3543839
End: 3546511
Strand: Reverse
Name: levR [H]
Synonym: CLL_A3361
Alternate gene names: 187934013
Gene position: 3546511-3543839 (Counterclockwise)
Preceding gene: 187932987
Following gene: 187933026
Centisome position: 93.32
GC content: 26.26
Gene sequence:
>2673_bases GTGTCTGATGATTATAAAGCAAAAGATAAATTGAGTAGAAAAGAGCGAGTATATAAAAAATTAAAAGATCTTACTCAAAC TATAAATTTTAGTGAAACGTTAGAAGAAAAAATAGGATTTGAAGCTAGCTACATAGCTAAGGAATTAAATATATCTAGAA ACAATGTGAGTAAGGAATTGAATTGTCTTGTAAATGAAGAAATGGCAGTTAAAATTCAAGGCAAACCAGTATTATATTTA GATAAGATTTATTTACAACTAAAATTTGGTATAAGTATAAAAGAATCAGTAATAACAGAATATAGTTATTTGAGTAAAAT GTTAAAAAATGAAATAAGCTTGAAAAAAGATGAAGAGTTTAAAGATATAAAAGATATTAGAGTATTAGAAAAAGAGAAAG AGAAACTGCCTAAATATAAAAAAACTATTTTTAAAAGCATAATTGGTAGTGAAGATTCATTAAAATCACAAATTAAACAA GCAAAAGCAACAATATTATATCCACCTAATGGATTACATACTTTATTAATAGGACCTACAGGTGTTGGAAAAACTACATT TGCTGAAGCTATGTACATATATGCAATAGAATCAGGAAGATTTACAAAAGATTATCCATATATTATATTTAATTGTGCAG ATTATGCAGAAAATTCTCAACTTCTCCTTTCACATTTATTTGGACATGTAAAAGGAGCATTTACTGGGGCAAGCTGTGAA AAAAAAGGATTGGTAGATCAAGCTAATGGTGGAATATTATTTTTAGATGAGGTACATCGTCTATCTCCAGAAGGACAGGA AATGTTATTTTCGTTAATGGATAGGGGTAGCTATAGAAGGTTAGGAGAATCGGAGAATACAAGGAAAGCTAATATATTAT TTATAGCAGCAACAACCGAGAATCCAAAATCAGCTATTTTAGAAACATTTTTAAGAAGAATTCCTGTGACAATTAACCTG CCAAGCTTAAGTAAACGTTCACTTAAAGAGAGGATGGAACTTATTTGTCAATTTTTTAAAAACGAATCTATAAAAATTAA GGCTCCATTGAAAGTATCTAAAGAAGTATTAAAGGTATTGTTACTTTATAAATGTCCTGGAAATATAGGTCAGTTAAAGA ATGATATTCAACTTATTTGTGCCAATGCATTTGTTGAATATATTACAGAAGAATATGACTATGTATATGTAAAGTTATCT CAAATTTCTCAGAGATTTAAAGAGGGCTTATTTGAAATCGAAGATAAAAGACAAGAACTAATTAAATATTTTGATTTAAA TGATTTTGAGTCTATAATATTTAATGGCTCAAGTGAAGAATCAGATGACAATATAAATCGACTGTTATTGTATGATGATT ATAATACTGAAGGAGATTTTTATGATTTAATGTTACAAAAAGCTCAAAAGTTTTATGCAGATGGATTATCTATAAAACAG ATTAGAGAAAATATAGTTAATCAAATTCAATATAGATTTAATAACACCTCATCTATAGAAAAATCTGAAGACTTAGAACT TGATAAAGAAGTACTATCCAAAATAGTAACACCAGAAATTGTTCAGATTATTAAAGAATCATTTATAGAAGATTCAGGGG AGTGTATTAAAAACATAGATACAAAATTAATATATAGTTTAGCATTACATATAGAAACTCTTTTGGAAAGATTAAGAATA GGAAACATAGTTATATACCCTAAATCTGAAGATAATTATAAAGATTATAAGCAAGAATATGGTCTTGCAACATTAATAAA ATCTAAAATAGAAGAAAAGTTTTTTGTTAAAATACCTAATGATGAATTAGTATTTATAACTATGTTTTTACATTCTGTAA ATACTAAAAAAGAACACGGTAATATTCAAGTTTTAGTAATTGCACATGGATATGGCACTGCAACTAATATGGTTGATGTT GCAAAGACACTTTTAGGATATGAGTGTATACATGCATTGGATATGCCATTAGAAGAAAAAGTTGAGGTTACTTTAAAAAA AGCGATAGATACAGTTAGTAAAATAGACAAAGGAAGTGGAGTTTTACTATTAGTTGATATGGGATCCTTAGCTACATTTG GAGATGTAATTACGGAAAAAACAGGAATAGAAACAAGAACAATAAAAATGGTTAGTACACCTATGGTTATTGAAGCAGCA AGAAAAGCTATGACTTCAAATATAAATATGGATATATTAGTAAACAATATAGAAAATGTTAGTTCATTAATTGGAGGTAG AGTAAAAGTAAGTACAGAAAATATAGATTCAAAAAATTTAGAATTAGGAATTAATTATGAAAATATGAATTGGAAAAAGC ATATTATAAAGTTATTGGATGAAGCACTTACATTCTTGAATGTTGAAAAGGCATCAGAAGTATTAAATCAAGTTTTAAAA AAAATAGCTACAGATTGTGATAATAAAATTGATGATAGCTTGTATATAAAATTTTTATTTCATTGTTCTTGTATGATAGA GCGAGTTATAAGAAATGAGTCTTTACCATATAAAAAATTTTTAACAATAAAAAATAGTAAGAATAAACTTTTTAATATTA TAAAAAACAATTTTGAATTAGTTGAAGAAATATTTGGGATTTCTATTCCAGATTCAGAATTAGCATACATAGTTGAAATG GTTGATATTAGCTTTAATATAACAAAAAATTAA
Upstream 100 bases:
>100_bases TTTAAAAATGTACATAAACTGAATTTAATTTATACGCTATGTTTTGATATCAACACTAATTTAAAACATAGCTAATTTAT AAAAAAAAGGAGATGTTTCA
Downstream 100 bases:
>100_bases AGTTATGTTTTAGCAAAGTGTTGATATATGCATAAGCAAAGTGGACTGAGTAATTGAACTTAAGAACACTAAAATAAGTA TAGTCCCATTTCAGCTTGTT
Product: LevR family transcriptional regulator
Products: NA
Alternate protein names: Putative phosphotransferase EIIA component; Putative PTS system EIIA component [H]
Number of amino acids: Translated: 890; Mature: 889
Protein sequence:
>890_residues MSDDYKAKDKLSRKERVYKKLKDLTQTINFSETLEEKIGFEASYIAKELNISRNNVSKELNCLVNEEMAVKIQGKPVLYL DKIYLQLKFGISIKESVITEYSYLSKMLKNEISLKKDEEFKDIKDIRVLEKEKEKLPKYKKTIFKSIIGSEDSLKSQIKQ AKATILYPPNGLHTLLIGPTGVGKTTFAEAMYIYAIESGRFTKDYPYIIFNCADYAENSQLLLSHLFGHVKGAFTGASCE KKGLVDQANGGILFLDEVHRLSPEGQEMLFSLMDRGSYRRLGESENTRKANILFIAATTENPKSAILETFLRRIPVTINL PSLSKRSLKERMELICQFFKNESIKIKAPLKVSKEVLKVLLLYKCPGNIGQLKNDIQLICANAFVEYITEEYDYVYVKLS QISQRFKEGLFEIEDKRQELIKYFDLNDFESIIFNGSSEESDDNINRLLLYDDYNTEGDFYDLMLQKAQKFYADGLSIKQ IRENIVNQIQYRFNNTSSIEKSEDLELDKEVLSKIVTPEIVQIIKESFIEDSGECIKNIDTKLIYSLALHIETLLERLRI GNIVIYPKSEDNYKDYKQEYGLATLIKSKIEEKFFVKIPNDELVFITMFLHSVNTKKEHGNIQVLVIAHGYGTATNMVDV AKTLLGYECIHALDMPLEEKVEVTLKKAIDTVSKIDKGSGVLLLVDMGSLATFGDVITEKTGIETRTIKMVSTPMVIEAA RKAMTSNINMDILVNNIENVSSLIGGRVKVSTENIDSKNLELGINYENMNWKKHIIKLLDEALTFLNVEKASEVLNQVLK KIATDCDNKIDDSLYIKFLFHCSCMIERVIRNESLPYKKFLTIKNSKNKLFNIIKNNFELVEEIFGISIPDSELAYIVEM VDISFNITKN
Sequences:
>Translated_890_residues MSDDYKAKDKLSRKERVYKKLKDLTQTINFSETLEEKIGFEASYIAKELNISRNNVSKELNCLVNEEMAVKIQGKPVLYL DKIYLQLKFGISIKESVITEYSYLSKMLKNEISLKKDEEFKDIKDIRVLEKEKEKLPKYKKTIFKSIIGSEDSLKSQIKQ AKATILYPPNGLHTLLIGPTGVGKTTFAEAMYIYAIESGRFTKDYPYIIFNCADYAENSQLLLSHLFGHVKGAFTGASCE KKGLVDQANGGILFLDEVHRLSPEGQEMLFSLMDRGSYRRLGESENTRKANILFIAATTENPKSAILETFLRRIPVTINL PSLSKRSLKERMELICQFFKNESIKIKAPLKVSKEVLKVLLLYKCPGNIGQLKNDIQLICANAFVEYITEEYDYVYVKLS QISQRFKEGLFEIEDKRQELIKYFDLNDFESIIFNGSSEESDDNINRLLLYDDYNTEGDFYDLMLQKAQKFYADGLSIKQ IRENIVNQIQYRFNNTSSIEKSEDLELDKEVLSKIVTPEIVQIIKESFIEDSGECIKNIDTKLIYSLALHIETLLERLRI GNIVIYPKSEDNYKDYKQEYGLATLIKSKIEEKFFVKIPNDELVFITMFLHSVNTKKEHGNIQVLVIAHGYGTATNMVDV AKTLLGYECIHALDMPLEEKVEVTLKKAIDTVSKIDKGSGVLLLVDMGSLATFGDVITEKTGIETRTIKMVSTPMVIEAA RKAMTSNINMDILVNNIENVSSLIGGRVKVSTENIDSKNLELGINYENMNWKKHIIKLLDEALTFLNVEKASEVLNQVLK KIATDCDNKIDDSLYIKFLFHCSCMIERVIRNESLPYKKFLTIKNSKNKLFNIIKNNFELVEEIFGISIPDSELAYIVEM VDISFNITKN >Mature_889_residues SDDYKAKDKLSRKERVYKKLKDLTQTINFSETLEEKIGFEASYIAKELNISRNNVSKELNCLVNEEMAVKIQGKPVLYLD KIYLQLKFGISIKESVITEYSYLSKMLKNEISLKKDEEFKDIKDIRVLEKEKEKLPKYKKTIFKSIIGSEDSLKSQIKQA KATILYPPNGLHTLLIGPTGVGKTTFAEAMYIYAIESGRFTKDYPYIIFNCADYAENSQLLLSHLFGHVKGAFTGASCEK KGLVDQANGGILFLDEVHRLSPEGQEMLFSLMDRGSYRRLGESENTRKANILFIAATTENPKSAILETFLRRIPVTINLP SLSKRSLKERMELICQFFKNESIKIKAPLKVSKEVLKVLLLYKCPGNIGQLKNDIQLICANAFVEYITEEYDYVYVKLSQ ISQRFKEGLFEIEDKRQELIKYFDLNDFESIIFNGSSEESDDNINRLLLYDDYNTEGDFYDLMLQKAQKFYADGLSIKQI RENIVNQIQYRFNNTSSIEKSEDLELDKEVLSKIVTPEIVQIIKESFIEDSGECIKNIDTKLIYSLALHIETLLERLRIG NIVIYPKSEDNYKDYKQEYGLATLIKSKIEEKFFVKIPNDELVFITMFLHSVNTKKEHGNIQVLVIAHGYGTATNMVDVA KTLLGYECIHALDMPLEEKVEVTLKKAIDTVSKIDKGSGVLLLVDMGSLATFGDVITEKTGIETRTIKMVSTPMVIEAAR KAMTSNINMDILVNNIENVSSLIGGRVKVSTENIDSKNLELGINYENMNWKKHIIKLLDEALTFLNVEKASEVLNQVLKK IATDCDNKIDDSLYIKFLFHCSCMIERVIRNESLPYKKFLTIKNSKNKLFNIIKNNFELVEEIFGISIPDSELAYIVEMV DISFNITKN
Specific function: Involved in positive regulation of the levanase operon which comprises the levDEFG genes for a fructose PTS system, and sacA for levanase [H]
COG id: COG1221
COG function: function code KT; Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 sigma-54 factor interaction domain [H]
Homologues:
Organism=Escherichia coli, GI1787583, Length=244, Percent_Identity=32.7868852459016, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI1788905, Length=287, Percent_Identity=29.9651567944251, Blast_Score=97, Evalue=5e-21, Organism=Escherichia coli, GI1790437, Length=233, Percent_Identity=31.7596566523605, Blast_Score=96, Evalue=8e-21, Organism=Escherichia coli, GI1789233, Length=227, Percent_Identity=33.0396475770925, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI87081872, Length=212, Percent_Identity=33.4905660377358, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI87082117, Length=211, Percent_Identity=33.6492890995261, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1789087, Length=245, Percent_Identity=32.6530612244898, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1788550, Length=211, Percent_Identity=32.7014218009479, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1789828, Length=162, Percent_Identity=34.5679012345679, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI1790299, Length=218, Percent_Identity=29.8165137614679, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1786524, Length=252, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI87082152, Length=215, Percent_Identity=31.1627906976744, Blast_Score=79, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR011608 - InterPro: IPR004701 - InterPro: IPR002078 - InterPro: IPR001550 [H]
Pfam domain/function: PF03610 EIIA-man; PF00874 PRD; PF00158 Sigma54_activat [H]
EC number: NA
Molecular weight: Translated: 101839; Mature: 101708
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: PS00690 DEAH_ATP_HELICASE ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4 ; PS51096 PTS_EIIA_TYPE_4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDYKAKDKLSRKERVYKKLKDLTQTINFSETLEEKIGFEASYIAKELNISRNNVSKEL CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH NCLVNEEMAVKIQGKPVLYLDKIYLQLKFGISIKESVITEYSYLSKMLKNEISLKKDEEF HHHCCCCEEEEECCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH KDIKDIRVLEKEKEKLPKYKKTIFKSIIGSEDSLKSQIKQAKATILYPPNGLHTLLIGPT HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCCEEEEECCC GVGKTTFAEAMYIYAIESGRFTKDYPYIIFNCADYAENSQLLLSHLFGHVKGAFTGASCE CCCCHHHHHEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC KKGLVDQANGGILFLDEVHRLSPEGQEMLFSLMDRGSYRRLGESENTRKANILFIAATTE CCCCCCCCCCCEEEEEHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEEEECC NPKSAILETFLRRIPVTINLPSLSKRSLKERMELICQFFKNESIKIKAPLKVSKEVLKVL CHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH LLYKCPGNIGQLKNDIQLICANAFVEYITEEYDYVYVKLSQISQRFKEGLFEIEDKRQEL HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH IKYFDLNDFESIIFNGSSEESDDNINRLLLYDDYNTEGDFYDLMLQKAQKFYADGLSIKQ HHHHCCCCHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHH IRENIVNQIQYRFNNTSSIEKSEDLELDKEVLSKIVTPEIVQIIKESFIEDSGECIKNID HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHH TKLIYSLALHIETLLERLRIGNIVIYPKSEDNYKDYKQEYGLATLIKSKIEEKFFVKIPN HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHCCCEEEEECCC DELVFITMFLHSVNTKKEHGNIQVLVIAHGYGTATNMVDVAKTLLGYECIHALDMPLEEK CCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH VEVTLKKAIDTVSKIDKGSGVLLLVDMGSLATFGDVITEKTGIETRTIKMVSTPMVIEAA HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH RKAMTSNINMDILVNNIENVSSLIGGRVKVSTENIDSKNLELGINYENMNWKKHIIKLLD HHHHHCCCCEEEEECCHHHHHHHHCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHH EALTFLNVEKASEVLNQVLKKIATDCDNKIDDSLYIKFLFHCSCMIERVIRNESLPYKKF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHE LTIKNSKNKLFNIIKNNFELVEEIFGISIPDSELAYIVEMVDISFNITKN EEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEEEECC >Mature Secondary Structure SDDYKAKDKLSRKERVYKKLKDLTQTINFSETLEEKIGFEASYIAKELNISRNNVSKEL CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH NCLVNEEMAVKIQGKPVLYLDKIYLQLKFGISIKESVITEYSYLSKMLKNEISLKKDEEF HHHCCCCEEEEECCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH KDIKDIRVLEKEKEKLPKYKKTIFKSIIGSEDSLKSQIKQAKATILYPPNGLHTLLIGPT HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCCEEEEECCC GVGKTTFAEAMYIYAIESGRFTKDYPYIIFNCADYAENSQLLLSHLFGHVKGAFTGASCE CCCCHHHHHEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC KKGLVDQANGGILFLDEVHRLSPEGQEMLFSLMDRGSYRRLGESENTRKANILFIAATTE CCCCCCCCCCCEEEEEHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEEEECC NPKSAILETFLRRIPVTINLPSLSKRSLKERMELICQFFKNESIKIKAPLKVSKEVLKVL CHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH LLYKCPGNIGQLKNDIQLICANAFVEYITEEYDYVYVKLSQISQRFKEGLFEIEDKRQEL HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH IKYFDLNDFESIIFNGSSEESDDNINRLLLYDDYNTEGDFYDLMLQKAQKFYADGLSIKQ HHHHCCCCHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHH IRENIVNQIQYRFNNTSSIEKSEDLELDKEVLSKIVTPEIVQIIKESFIEDSGECIKNID HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHH TKLIYSLALHIETLLERLRIGNIVIYPKSEDNYKDYKQEYGLATLIKSKIEEKFFVKIPN HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHCCCEEEEECCC DELVFITMFLHSVNTKKEHGNIQVLVIAHGYGTATNMVDVAKTLLGYECIHALDMPLEEK CCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH VEVTLKKAIDTVSKIDKGSGVLLLVDMGSLATFGDVITEKTGIETRTIKMVSTPMVIEAA HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH RKAMTSNINMDILVNNIENVSSLIGGRVKVSTENIDSKNLELGINYENMNWKKHIIKLLD HHHHHCCCCEEEEECCHHHHHHHHCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHH EALTFLNVEKASEVLNQVLKKIATDCDNKIDDSLYIKFLFHCSCMIERVIRNESLPYKKF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHE LTIKNSKNKLFNIIKNNFELVEEIFGISIPDSELAYIVEMVDISFNITKN EEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1900939; 9141695; 9384377 [H]