Click here to switch to the map view.

The map label for this gene is 187933802

Identifier: 187933802

GI number: 187933802

Start: 2782505

End: 2783029

Strand: Reverse

Name: 187933802

Synonym: CLL_A2662

Alternate gene names: NA

Gene position: 2783029-2782505 (Counterclockwise)

Preceding gene: 187934580

Following gene: 187932422

Centisome position: 73.23

GC content: 21.9

Gene sequence:

>525_bases
GTGCAAGAAACGAATATTGAAAAATTAATTACTGATATATATAACAATACTTATGATGATGTATTAAGATATGTAGTATC
AAAATGTAGAAGTAGTGATGATATAGCAGATATAATGCAAAATATATATTTGAATTTTTATAAAGCTTTAAAAAATAAAA
GAGAAATAAAAGAATATAAAAAGTATTTAATAAGAATTGCAAGAAATGAAGTATATAAGCATTATGGATTATTAAAAATG
TTACAAAATCATATTCCAATATTTTCACTAAATGATGAGAAACAATTTAAAAATATTCAAGAGGATTTAAATATTGAATA
TAACTATGAAGAAGAAGCATTATGTGAGGAGATATGGGGGTATATAAAGAAAAAGGATATACTTACATTTAAGATATTTG
TTTTATATTTTCAAAGTGATTTGAAAATAAAAGACATAAGTAAGAGCCTTAATGTAAGTGAGTCTACTGTTAAAAATAGA
CTGTATCGGACAATGAATAAAATAAATGAAGAATTTGAAATATAG

Upstream 100 bases:

>100_bases
CTGTTTTAAAACATATCTAAAATAAATTTCAATTAAATTTATTTTTATTGAAACAAAATTTAATATATAAGTATCATTAT
TAGTGTAAGGAGTGTGAGAT

Downstream 100 bases:

>100_bases
GAGGGCGTATTTTGAATAAAGAGGATATAGTTAAAAAATCAATTAGAAAAGGATTAGAATCTAAAGAAGAAATATTACAG
AATATTTTAAATGTAGTAAG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MQETNIEKLITDIYNNTYDDVLRYVVSKCRSSDDIADIMQNIYLNFYKALKNKREIKEYKKYLIRIARNEVYKHYGLLKM
LQNHIPIFSLNDEKQFKNIQEDLNIEYNYEEEALCEEIWGYIKKKDILTFKIFVLYFQSDLKIKDISKSLNVSESTVKNR
LYRTMNKINEEFEI

Sequences:

>Translated_174_residues
MQETNIEKLITDIYNNTYDDVLRYVVSKCRSSDDIADIMQNIYLNFYKALKNKREIKEYKKYLIRIARNEVYKHYGLLKM
LQNHIPIFSLNDEKQFKNIQEDLNIEYNYEEEALCEEIWGYIKKKDILTFKIFVLYFQSDLKIKDISKSLNVSESTVKNR
LYRTMNKINEEFEI
>Mature_174_residues
MQETNIEKLITDIYNNTYDDVLRYVVSKCRSSDDIADIMQNIYLNFYKALKNKREIKEYKKYLIRIARNEVYKHYGLLKM
LQNHIPIFSLNDEKQFKNIQEDLNIEYNYEEEALCEEIWGYIKKKDILTFKIFVLYFQSDLKIKDISKSLNVSESTVKNR
LYRTMNKINEEFEI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21132; Mature: 21132

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQETNIEKLITDIYNNTYDDVLRYVVSKCRSSDDIADIMQNIYLNFYKALKNKREIKEYK
CCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KYLIRIARNEVYKHYGLLKMLQNHIPIFSLNDEKQFKNIQEDLNIEYNYEEEALCEEIWG
HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
YIKKKDILTFKIFVLYFQSDLKIKDISKSLNVSESTVKNRLYRTMNKINEEFEI
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQETNIEKLITDIYNNTYDDVLRYVVSKCRSSDDIADIMQNIYLNFYKALKNKREIKEYK
CCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KYLIRIARNEVYKHYGLLKMLQNHIPIFSLNDEKQFKNIQEDLNIEYNYEEEALCEEIWG
HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
YIKKKDILTFKIFVLYFQSDLKIKDISKSLNVSESTVKNRLYRTMNKINEEFEI
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA