Click here to switch to the map view.

The map label for this gene is ydhO [C]

Identifier: 187933547

GI number: 187933547

Start: 2298937

End: 2299938

Strand: Reverse

Name: ydhO [C]

Synonym: CLL_A2215

Alternate gene names: 187933547

Gene position: 2299938-2298937 (Counterclockwise)

Preceding gene: 187934671

Following gene: 187935478

Centisome position: 60.52

GC content: 28.54

Gene sequence:

>1002_bases
ATGAAAAAGAAGTTTACAATTATAATTATATCAGCAGTTATACTTTTAAATTCTGTAAGTAGTACTATATCAGTCAGTGC
AGCTCCAAATAATTTAAGTATAAATGAAGTTATTCAAAACATACAAGAATATGATAGTAAAATTGAAACAAATATGGACA
AGTTAAATAAATATAAAGAACAAATTCTAGAAAAAGAAAATGAAATAAAAGCAAATGAAGAAGACGTAGAAATAGCTAAA
AGGAATTTAGAACAAAAGGATGAACTATTATCTGAAAGATTAAGAAATGTTCACATGGATGGTGGATTTGAAGTGACACC
ATTAAAATATTTAGAAGCTTTCTTTACTTCAGGAAATATAATGGATGCAGTAGAAAAAGTTCAAGTGATTTCTCAAATGT
GCAAGAGTGATAAAAAGCTTGTTATAGAAGCTAAAAATGCTGAGCAAAATCTTAATGATATGCAAAAGAAAATAGAAAAA
GAAAATGAAGAATTACAAAAAAATAAAGATGAAATAGAAAAGAATATTAAAGAGTTAGAAGATCAAAAGAAGCAACTTGT
AGATTATGTACAAGAAAATAGTGATATCTTAATAGATAGTACAAGCAGTATAATACCAATAACGTTATCTTCTGATATAT
CAGAAGAAGCTAGAGCTATAATTAAGGAGGCTCAAAAATATTTAGGAATTCCTTATTTATGGGGAGGAACAACTCCAGAT
GGGTTTGATTGTTCAGGGCTTATGCAATATGTTTTTAATTCACAAGGAATAGAGATACCAAGAGTATCACAAGATCAACA
AAGTTTTGCAGAGCCTATTAATTTATCAGAATTAAAACCAGGTGATTTGGTATTTAATAAACCATCAAATTCAACACATG
TTGGGCTTTACATAGGGGATGACAAGTATTTACATGCTCCACACACAGGAGATGTTGTAAAGATTTCTACACTTTCAACT
TCAAACATGAAATATGCTGGAAGAGTACTAAAAGTAGATTAA

Upstream 100 bases:

>100_bases
GTCTTCTATACTCATAAAATTAAATTTACTTGTACATTCATTGGATGAATAGGTAAATATTCTGGTTTTATATTATATAA
AACTATATAAGGAGAATATG

Downstream 100 bases:

>100_bases
AACTATTTTTTAGCAGAGTGTTTATATAGGTATAAGTAAAATGGGAGAAAAAATAAAAATGGGTGTAGTAAGTATTGCTT
ACTACACCCATTTTTCTAAG

Product: exported peptidoglycan lytic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MKKKFTIIIISAVILLNSVSSTISVSAAPNNLSINEVIQNIQEYDSKIETNMDKLNKYKEQILEKENEIKANEEDVEIAK
RNLEQKDELLSERLRNVHMDGGFEVTPLKYLEAFFTSGNIMDAVEKVQVISQMCKSDKKLVIEAKNAEQNLNDMQKKIEK
ENEELQKNKDEIEKNIKELEDQKKQLVDYVQENSDILIDSTSSIIPITLSSDISEEARAIIKEAQKYLGIPYLWGGTTPD
GFDCSGLMQYVFNSQGIEIPRVSQDQQSFAEPINLSELKPGDLVFNKPSNSTHVGLYIGDDKYLHAPHTGDVVKISTLST
SNMKYAGRVLKVD

Sequences:

>Translated_333_residues
MKKKFTIIIISAVILLNSVSSTISVSAAPNNLSINEVIQNIQEYDSKIETNMDKLNKYKEQILEKENEIKANEEDVEIAK
RNLEQKDELLSERLRNVHMDGGFEVTPLKYLEAFFTSGNIMDAVEKVQVISQMCKSDKKLVIEAKNAEQNLNDMQKKIEK
ENEELQKNKDEIEKNIKELEDQKKQLVDYVQENSDILIDSTSSIIPITLSSDISEEARAIIKEAQKYLGIPYLWGGTTPD
GFDCSGLMQYVFNSQGIEIPRVSQDQQSFAEPINLSELKPGDLVFNKPSNSTHVGLYIGDDKYLHAPHTGDVVKISTLST
SNMKYAGRVLKVD
>Mature_333_residues
MKKKFTIIIISAVILLNSVSSTISVSAAPNNLSINEVIQNIQEYDSKIETNMDKLNKYKEQILEKENEIKANEEDVEIAK
RNLEQKDELLSERLRNVHMDGGFEVTPLKYLEAFFTSGNIMDAVEKVQVISQMCKSDKKLVIEAKNAEQNLNDMQKKIEK
ENEELQKNKDEIEKNIKELEDQKKQLVDYVQENSDILIDSTSSIIPITLSSDISEEARAIIKEAQKYLGIPYLWGGTTPD
GFDCSGLMQYVFNSQGIEIPRVSQDQQSFAEPINLSELKPGDLVFNKPSNSTHVGLYIGDDKYLHAPHTGDVVKISTLST
SNMKYAGRVLKVD

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787944, Length=99, Percent_Identity=43.4343434343434, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788501, Length=180, Percent_Identity=27.7777777777778, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1786421, Length=122, Percent_Identity=37.7049180327869, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788001, Length=98, Percent_Identity=35.7142857142857, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 37611; Mature: 37611

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKFTIIIISAVILLNSVSSTISVSAAPNNLSINEVIQNIQEYDSKIETNMDKLNKYKE
CCCEEEEHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QILEKENEIKANEEDVEIAKRNLEQKDELLSERLRNVHMDGGFEVTPLKYLEAFFTSGNI
HHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCCH
MDAVEKVQVISQMCKSDKKLVIEAKNAEQNLNDMQKKIEKENEELQKNKDEIEKNIKELE
HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQKKQLVDYVQENSDILIDSTSSIIPITLSSDISEEARAIIKEAQKYLGIPYLWGGTTPD
HHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCC
GFDCSGLMQYVFNSQGIEIPRVSQDQQSFAEPINLSELKPGDLVFNKPSNSTHVGLYIGD
CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEECC
DKYLHAPHTGDVVKISTLSTSNMKYAGRVLKVD
CCEEECCCCCCEEEEEECCCCCCHHCCEEEECC
>Mature Secondary Structure
MKKKFTIIIISAVILLNSVSSTISVSAAPNNLSINEVIQNIQEYDSKIETNMDKLNKYKE
CCCEEEEHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QILEKENEIKANEEDVEIAKRNLEQKDELLSERLRNVHMDGGFEVTPLKYLEAFFTSGNI
HHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCCH
MDAVEKVQVISQMCKSDKKLVIEAKNAEQNLNDMQKKIEKENEELQKNKDEIEKNIKELE
HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQKKQLVDYVQENSDILIDSTSSIIPITLSSDISEEARAIIKEAQKYLGIPYLWGGTTPD
HHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCC
GFDCSGLMQYVFNSQGIEIPRVSQDQQSFAEPINLSELKPGDLVFNKPSNSTHVGLYIGD
CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEECC
DKYLHAPHTGDVVKISTLSTSNMKYAGRVLKVD
CCEEECCCCCCEEEEEECCCCCCHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]