| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is yycG [H]
Identifier: 187933521
GI number: 187933521
Start: 1944108
End: 1945871
Strand: Reverse
Name: yycG [H]
Synonym: CLL_A1851
Alternate gene names: 187933521
Gene position: 1945871-1944108 (Counterclockwise)
Preceding gene: 187933765
Following gene: 187933655
Centisome position: 51.2
GC content: 22.85
Gene sequence:
>1764_bases ATGGGTAAAGAAGAAAATCAGGTATATGTATTTAAAAACTTAAAGGACATGTTAAAATCACAACCTGCAAAAGAAATTGT AAACAATAAATATATTAATGAGTGTGTTAGAGAGGAATCTGAGAATTTTAAAAATACATTAATAAATTTAAATAGAGAAA CAAATGCAGAAGGAATTACTTTATTTTTATACGATGAAAAAGAAAACATGTTAAAATTAAAATTTAAGTTAGGAAATGCA TCAGTGATAGAAGATAATTATACAATAAAATTATGTGAAGAATCTAAGGCAAATTTAATTACCAATAAATATGTTCACAG AACTATAGATATAAAAGAAACATATTTGTTTAAAAAATATATAGAAAACAATAATATTAATATAAATAAAAACTATGGAT ATATAAGAATGTATTCAATAAAAGATACAAATAGATTAATAGGTGTTTTAAGTATTTTTTATGATAAAAATATTGATTTG GATAAGATAAATAACAATGTTATAGATTACGAATGTGAGAAATTAGAATTATTAATTAAAAATAAAATTTTAACCAATAA ATTAAGAGAAGAACTTATAAAAAGAACATTAAGTGAAAGTAAGCTAAAATCTTTTTTGGAAATTGCAACTGATTTGTGGG CAATAATGGATTATAAACAACATTTTAAGTGTGTATCTCCAAGTGTTATTGATGTTACAGGATGGAGTAATGAAAAAATA TCAATAATGAATGTATTTGATATGGTACATCCAGATGATAGAGAAAGAGCAAGAAAATATATAAAATTTATAAAAGATGC AAAAGGTGAAAATTCTATTGCTAAAGTACTGTGTGCAAATGGTGAATGTAAGATATTTCAATGGAATTGGAGCTGTATTG AAGAAGGAAAATATGTATTTTTAGCTGCAAAAGATATTACAGAACAAAGAAAATTACAGCAACAAAAAAAAGAACTAGAA GAAGCCATTATGATTGAAAATTTCAAAAATAAGTTTCTTGCTAATATATCACATGAATTTAAGACACCTTTAAATGTAAT ACTTTCTACTTTACAGCTTATAGATAAAAATAGCAATGATTTAAAAATTCATGAAATAGATTTAATTAATTACATAGATG GAATTAAGAGAAATTCTTATAGGCTATTAAGACTTATAAATAATCTAATAGATATAACTAAAATAGATTCAGGACATTAT AATTTACAACTGCAAAATTATAATGCGGTTGAAATAATTGAAGATATAGTAATGGCAGTAAGAGAATATATAAAAGAAAA CACTAGAGATATAATTTTTGATACAAGTGAAGAAGAAATAATAACGGCTTTGGATGAAAATAAAATTGAAACTATAATAT TAAATTTACTTTCTAACGCTATAAAATATACAAATGATGATGGAATAATAGAAGTAAGTATAAAATACAGTAAAGATAGA AAAAATATACTTATTAGTATAAAAGATAATGGAATAGGAATAGATAGTAATGATATAAATAATATTTTTAAAAGATTTAA ATATTCTAATAATATACTTAATAGAAGATGTGAGGGTACAGGAGTAGGTTTATCACTTGTAAAATCTTTAGTGGAAATGC ATGGCGGTAAGATAATTGCTAAAAATAATCAACTTAAAGGAGCAGAGTTCATTTTTTCAATTCCAGTGAAATTAACACGG GGTGATACTACTAATAATAATAAGATTTTAGAAAGTAGTATAAAAAAATGTAATATAGAATTTTCAGACATATATTTTCT ATAA
Upstream 100 bases:
>100_bases TTTTTTATGACAAAACTTGATTCAAGGTTTGAAAAATATAATATAGAATTTTCGGATGTATATTAGAGTGTCATGGTTAC TATAATAAGGGGATAATATA
Downstream 100 bases:
>100_bases GAAAACTATTTATTTTACTTATAGAATTTGCTAATTATCTTTTTGTAAACTATATTAAAGTGAAATTATATTAGTAAATT AAGTATAATATAATTTCACT
Product: two-component sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 587; Mature: 586
Protein sequence:
>587_residues MGKEENQVYVFKNLKDMLKSQPAKEIVNNKYINECVREESENFKNTLINLNRETNAEGITLFLYDEKENMLKLKFKLGNA SVIEDNYTIKLCEESKANLITNKYVHRTIDIKETYLFKKYIENNNININKNYGYIRMYSIKDTNRLIGVLSIFYDKNIDL DKINNNVIDYECEKLELLIKNKILTNKLREELIKRTLSESKLKSFLEIATDLWAIMDYKQHFKCVSPSVIDVTGWSNEKI SIMNVFDMVHPDDRERARKYIKFIKDAKGENSIAKVLCANGECKIFQWNWSCIEEGKYVFLAAKDITEQRKLQQQKKELE EAIMIENFKNKFLANISHEFKTPLNVILSTLQLIDKNSNDLKIHEIDLINYIDGIKRNSYRLLRLINNLIDITKIDSGHY NLQLQNYNAVEIIEDIVMAVREYIKENTRDIIFDTSEEEIITALDENKIETIILNLLSNAIKYTNDDGIIEVSIKYSKDR KNILISIKDNGIGIDSNDINNIFKRFKYSNNILNRRCEGTGVGLSLVKSLVEMHGGKIIAKNNQLKGAEFIFSIPVKLTR GDTTNNNKILESSIKKCNIEFSDIYFL
Sequences:
>Translated_587_residues MGKEENQVYVFKNLKDMLKSQPAKEIVNNKYINECVREESENFKNTLINLNRETNAEGITLFLYDEKENMLKLKFKLGNA SVIEDNYTIKLCEESKANLITNKYVHRTIDIKETYLFKKYIENNNININKNYGYIRMYSIKDTNRLIGVLSIFYDKNIDL DKINNNVIDYECEKLELLIKNKILTNKLREELIKRTLSESKLKSFLEIATDLWAIMDYKQHFKCVSPSVIDVTGWSNEKI SIMNVFDMVHPDDRERARKYIKFIKDAKGENSIAKVLCANGECKIFQWNWSCIEEGKYVFLAAKDITEQRKLQQQKKELE EAIMIENFKNKFLANISHEFKTPLNVILSTLQLIDKNSNDLKIHEIDLINYIDGIKRNSYRLLRLINNLIDITKIDSGHY NLQLQNYNAVEIIEDIVMAVREYIKENTRDIIFDTSEEEIITALDENKIETIILNLLSNAIKYTNDDGIIEVSIKYSKDR KNILISIKDNGIGIDSNDINNIFKRFKYSNNILNRRCEGTGVGLSLVKSLVEMHGGKIIAKNNQLKGAEFIFSIPVKLTR GDTTNNNKILESSIKKCNIEFSDIYFL >Mature_586_residues GKEENQVYVFKNLKDMLKSQPAKEIVNNKYINECVREESENFKNTLINLNRETNAEGITLFLYDEKENMLKLKFKLGNAS VIEDNYTIKLCEESKANLITNKYVHRTIDIKETYLFKKYIENNNININKNYGYIRMYSIKDTNRLIGVLSIFYDKNIDLD KINNNVIDYECEKLELLIKNKILTNKLREELIKRTLSESKLKSFLEIATDLWAIMDYKQHFKCVSPSVIDVTGWSNEKIS IMNVFDMVHPDDRERARKYIKFIKDAKGENSIAKVLCANGECKIFQWNWSCIEEGKYVFLAAKDITEQRKLQQQKKELEE AIMIENFKNKFLANISHEFKTPLNVILSTLQLIDKNSNDLKIHEIDLINYIDGIKRNSYRLLRLINNLIDITKIDSGHYN LQLQNYNAVEIIEDIVMAVREYIKENTRDIIFDTSEEEIITALDENKIETIILNLLSNAIKYTNDDGIIEVSIKYSKDRK NILISIKDNGIGIDSNDINNIFKRFKYSNNILNRRCEGTGVGLSLVKSLVEMHGGKIIAKNNQLKGAEFIFSIPVKLTRG DTTNNNKILESSIKKCNIEFSDIYFL
Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH and ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1789149, Length=269, Percent_Identity=31.5985130111524, Blast_Score=105, Evalue=8e-24, Organism=Escherichia coli, GI1786912, Length=231, Percent_Identity=27.2727272727273, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1788713, Length=263, Percent_Identity=28.5171102661597, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI145693157, Length=260, Percent_Identity=26.1538461538462, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI87081816, Length=252, Percent_Identity=28.968253968254, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI1788393, Length=268, Percent_Identity=25, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1786600, Length=262, Percent_Identity=22.9007633587786, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1790436, Length=255, Percent_Identity=25.4901960784314, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI48994928, Length=409, Percent_Identity=25.1833740831296, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1790346, Length=276, Percent_Identity=22.463768115942, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1787894, Length=228, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788549, Length=254, Percent_Identity=24.0157480314961, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1790300, Length=277, Percent_Identity=24.187725631769, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1790551, Length=217, Percent_Identity=22.5806451612903, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI1790861, Length=261, Percent_Identity=23.7547892720307, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1788279, Length=242, Percent_Identity=23.9669421487603, Blast_Score=63, Evalue=5e-11, Organism=Escherichia coli, GI87082128, Length=236, Percent_Identity=22.8813559322034, Blast_Score=62, Evalue=8e-11, Organism=Escherichia coli, GI1786783, Length=267, Percent_Identity=22.4719101123595, Blast_Score=62, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 68361; Mature: 68229
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: PS50112 PAS ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKEENQVYVFKNLKDMLKSQPAKEIVNNKYINECVREESENFKNTLINLNRETNAEGIT CCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEE LFLYDEKENMLKLKFKLGNASVIEDNYTIKLCEESKANLITNKYVHRTIDIKETYLFKKY EEEEECCCCEEEEEEEECCCEEEECCCEEEEECCCCCCHHHHHHHHEEECHHHHHHHHHH IENNNININKNYGYIRMYSIKDTNRLIGVLSIFYDKNIDLDKINNNVIDYECEKLELLIK HCCCCEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCHHHCCCCEECCCHHHHHHHHH NKILTNKLREELIKRTLSESKLKSFLEIATDLWAIMDYKQHFKCVSPSVIDVTGWSNEKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCE SIMNVFDMVHPDDRERARKYIKFIKDAKGENSIAKVLCANGECKIFQWNWSCIEEGKYVF EEEEHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEHEEECCCCEEEEEECCCEECCCCEEE LAAKDITEQRKLQQQKKELEEAIMIENFKNKFLANISHEFKTPLNVILSTLQLIDKNSND EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCCCCC LKIHEIDLINYIDGIKRNSYRLLRLINNLIDITKIDSGHYNLQLQNYNAVEIIEDIVMAV EEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCHHHHHHHHHHHH REYIKENTRDIIFDTSEEEIITALDENKIETIILNLLSNAIKYTNDDGIIEVSIKYSKDR HHHHHCCCCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC KNILISIKDNGIGIDSNDINNIFKRFKYSNNILNRRCEGTGVGLSLVKSLVEMHGGKIIA CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCEEEE KNNQLKGAEFIFSIPVKLTRGDTTNNNKILESSIKKCNIEFSDIYFL ECCCCCCCEEEEEECEEEECCCCCCCCHHHHHHHHHCCCCHHEEEEC >Mature Secondary Structure GKEENQVYVFKNLKDMLKSQPAKEIVNNKYINECVREESENFKNTLINLNRETNAEGIT CCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEE LFLYDEKENMLKLKFKLGNASVIEDNYTIKLCEESKANLITNKYVHRTIDIKETYLFKKY EEEEECCCCEEEEEEEECCCEEEECCCEEEEECCCCCCHHHHHHHHEEECHHHHHHHHHH IENNNININKNYGYIRMYSIKDTNRLIGVLSIFYDKNIDLDKINNNVIDYECEKLELLIK HCCCCEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCHHHCCCCEECCCHHHHHHHHH NKILTNKLREELIKRTLSESKLKSFLEIATDLWAIMDYKQHFKCVSPSVIDVTGWSNEKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCE SIMNVFDMVHPDDRERARKYIKFIKDAKGENSIAKVLCANGECKIFQWNWSCIEEGKYVF EEEEHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEHEEECCCCEEEEEECCCEECCCCEEE LAAKDITEQRKLQQQKKELEEAIMIENFKNKFLANISHEFKTPLNVILSTLQLIDKNSND EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCCCCC LKIHEIDLINYIDGIKRNSYRLLRLINNLIDITKIDSGHYNLQLQNYNAVEIIEDIVMAV EEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCHHHHHHHHHHHH REYIKENTRDIIFDTSEEEIITALDENKIETIILNLLSNAIKYTNDDGIIEVSIKYSKDR HHHHHCCCCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC KNILISIKDNGIGIDSNDINNIFKRFKYSNNILNRRCEGTGVGLSLVKSLVEMHGGKIIA CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCEEEE KNNQLKGAEFIFSIPVKLTRGDTTNNNKILESSIKKCNIEFSDIYFL ECCCCCCCEEEEEECEEEECCCCCCCCHHHHHHHHHCCCCHHEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 9829949; 10878122; 11758928 [H]