| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is lytA [H]
Identifier: 187933479
GI number: 187933479
Start: 3379843
End: 3382131
Strand: Reverse
Name: lytA [H]
Synonym: CLL_A3232
Alternate gene names: 187933479
Gene position: 3382131-3379843 (Counterclockwise)
Preceding gene: 187934388
Following gene: 187934696
Centisome position: 89.0
GC content: 27.35
Gene sequence:
>2289_bases ATGAGAGAGTTTATGAGACATATTCATTTTAAACCGATTGCAATGATTCTTACTATATTGTTTATTCAATTTACCTTTAA TTTTTATTTACCTTGCAAAGATTCTTATATTGCTTATGCTAGTGAGGTATTACATAAAGATGACATAGAGAAATATCATG AGTTATCTGAAAATTTGATTGGAAAATCTACAGAGTTAATGAGTAGAGAAAATATTTTAAGTAATAATGAGAATAATAAG GATGGTATTATTTTAAAAGATTTTAATGAAAGTCATATTGTTAAAGAATGTGATAATACAGAAAATACTGAATCAAAAGA TGAGAAAATTGTAGGGGATAGTAATAATACAATAGATAAAGATGATAATGTAAGTGAGAAACCTGATGAAGGAAATACAG GTGGAACTGAACAAGGTGGAAACAGTGGAAATGAATCTTCAGGTGGAAATAATGAGGATGTACCACCAGAAATAGATAAT AAGAAACAAGCTATAGTACCTTCAATAAATTCTTTTGCAGAAGATATGGGGAAAAATTATGAAAAGCTTACTGTAAGTGC AGCTAATATAAATGTACAAGGAGAATATACATTTATTATTTTAGCAAGTGATAAACTTAATGTATGTAAACATTCTGCTA CAAATAGCACTTTAAATAAGTGGTTTATACCACTTATAGAATTAAGCAAAGGTGAACAAAAATTATCTTATAGTACTGAT GGAAAAAACTTTTTTAAATTTAGTTTAGATTCAAATAATAAAATACCATATTATATGAGAGCTAATATAACAGGAGCACT TAATTATACTGAAAAAGAGCGTGATAGTATTCTTTATTTTAAGTATTCAGAGGATAATGATGACACAGCAATAAAAATTA GAATTCATTATATACCATCTGTAAATGCTAATGATAATAGCAACTCAGGTAATATTAGCGGAGATATATTGAAATCTGTA TATATATATGGAACTGAAAGGGTAGGAAGCACATTAAGAGCTAAGACTAAATATAACAATAATACAGACAAGCCTAAAGT TTCATATCAATGGTTAAGATGTAAAGACAAAGATGGAGAATATAAAGAAATAAGTGGTGCAGACAAAGAAGAATATAAGC TTAAAAGCAATGATAAAGGATATTATTTAAAAGTTAAGATAACAGTATCTGGAGAAGTTAGTGAAAGTAAAGAAAGCGAT AGAAGTGAAATAATTAAAGAAAAGTTAAAAGAAAATTCTTCAAGTAGTAATTCAGGAAGTAGCAGTTCAAATAATTATCA TAGTGGAATTGTAGTTGATACAGATAAAACAAATGATGATCAAATGTATTTAAATACTTCGTATTCAAGTAAGGTTGATA AAGAAATATTTGATTTAACTAAAGAATATGAATATAAAAAATTAATTCTTGAGGGAAGTAATTATGTATGGAATTTTAAT GCTTCGGATTTGAAAAATGTATCTCAAATGGATGATAATTTTGATTCTGAAATACAAACAAAAACACAAACTGATTCAGA AGTGGTTATAAACTTTAAACATCATGGAGTCTTACCAGGAAAAGCAACCATTCAAGTTAATGTTGGTGATGGATTAAATG GTGACAACAGATGCTTATACTATTATAATGAAGGAACTAATTCATTAGAGTTAATATCATCAAATGTAAGTGTTAAAAAA GGAAAAGCAATATTTACTATAACACATTGCTCTAAATATATATTATCAGCAAATCCAAATGCAAATAGCAATATATCTTC AGGTGATTATAATACAACCATAGAAACATCAACACAAGATAATTATGTAAATAATGTAGTTGATTCTGATAAAACTTTTA ATGATCCTAATTTAAATAATACAGATTCATCATCTTTAAAATGGAGAGAATCTATGGATGGGAAATGGTATCTTTGTAGT AATTCATTTATAATGACAGGATGGCAAAAAGTAGATAATAATTGGTACTACTTTAATGAATTTGGAGTGATGCAAAAAGA TTGGGTTAATTCAAATGGTAAGTGGTATTACTTAGATAATAATGGATGCATGATTACAGGATGGATAAAATCAAATAATA ATTGGTACTATACAAATTCTAGTGGAGAAATATCTACTGGCTGGAAAGAATTTAATAAAGTATGGTGTTACTTTAATATA AAGGGAGAAATGCAAACAGGATGGCAATATATAGACTATAGATGGTATTATCTATATCCAGATGGATCAATGGCATATAA CGTAGAAATTGATGGACGTGTACTAAATAACAATGGAGCTGCTAGATAA
Upstream 100 bases:
>100_bases TAATCTATAAAAATGTATTATTTTCCATATATAATGTATTATAATATTTATATATAAATATATTATATATGAAAACGTTT AAAGAGAAGGGGTTTTGATA
Downstream 100 bases:
>100_bases TATAGAAAGATTGGAATTTAGAGGCTATAGAAAATAAATTTAAGAAATTTTTTATAAAATAATATTTTTATCCCTAATAT TAGTTCTTATCTTATATTAG
Product: surface protein PspA
Products: NA
Alternate protein names: Cell wall hydrolase; Mucopeptide aminohydrolase; Murein hydrolase; N-acetylmuramoyl-L-alanine amidase [H]
Number of amino acids: Translated: 762; Mature: 762
Protein sequence:
>762_residues MREFMRHIHFKPIAMILTILFIQFTFNFYLPCKDSYIAYASEVLHKDDIEKYHELSENLIGKSTELMSRENILSNNENNK DGIILKDFNESHIVKECDNTENTESKDEKIVGDSNNTIDKDDNVSEKPDEGNTGGTEQGGNSGNESSGGNNEDVPPEIDN KKQAIVPSINSFAEDMGKNYEKLTVSAANINVQGEYTFIILASDKLNVCKHSATNSTLNKWFIPLIELSKGEQKLSYSTD GKNFFKFSLDSNNKIPYYMRANITGALNYTEKERDSILYFKYSEDNDDTAIKIRIHYIPSVNANDNSNSGNISGDILKSV YIYGTERVGSTLRAKTKYNNNTDKPKVSYQWLRCKDKDGEYKEISGADKEEYKLKSNDKGYYLKVKITVSGEVSESKESD RSEIIKEKLKENSSSSNSGSSSSNNYHSGIVVDTDKTNDDQMYLNTSYSSKVDKEIFDLTKEYEYKKLILEGSNYVWNFN ASDLKNVSQMDDNFDSEIQTKTQTDSEVVINFKHHGVLPGKATIQVNVGDGLNGDNRCLYYYNEGTNSLELISSNVSVKK GKAIFTITHCSKYILSANPNANSNISSGDYNTTIETSTQDNYVNNVVDSDKTFNDPNLNNTDSSSLKWRESMDGKWYLCS NSFIMTGWQKVDNNWYYFNEFGVMQKDWVNSNGKWYYLDNNGCMITGWIKSNNNWYYTNSSGEISTGWKEFNKVWCYFNI KGEMQTGWQYIDYRWYYLYPDGSMAYNVEIDGRVLNNNGAAR
Sequences:
>Translated_762_residues MREFMRHIHFKPIAMILTILFIQFTFNFYLPCKDSYIAYASEVLHKDDIEKYHELSENLIGKSTELMSRENILSNNENNK DGIILKDFNESHIVKECDNTENTESKDEKIVGDSNNTIDKDDNVSEKPDEGNTGGTEQGGNSGNESSGGNNEDVPPEIDN KKQAIVPSINSFAEDMGKNYEKLTVSAANINVQGEYTFIILASDKLNVCKHSATNSTLNKWFIPLIELSKGEQKLSYSTD GKNFFKFSLDSNNKIPYYMRANITGALNYTEKERDSILYFKYSEDNDDTAIKIRIHYIPSVNANDNSNSGNISGDILKSV YIYGTERVGSTLRAKTKYNNNTDKPKVSYQWLRCKDKDGEYKEISGADKEEYKLKSNDKGYYLKVKITVSGEVSESKESD RSEIIKEKLKENSSSSNSGSSSSNNYHSGIVVDTDKTNDDQMYLNTSYSSKVDKEIFDLTKEYEYKKLILEGSNYVWNFN ASDLKNVSQMDDNFDSEIQTKTQTDSEVVINFKHHGVLPGKATIQVNVGDGLNGDNRCLYYYNEGTNSLELISSNVSVKK GKAIFTITHCSKYILSANPNANSNISSGDYNTTIETSTQDNYVNNVVDSDKTFNDPNLNNTDSSSLKWRESMDGKWYLCS NSFIMTGWQKVDNNWYYFNEFGVMQKDWVNSNGKWYYLDNNGCMITGWIKSNNNWYYTNSSGEISTGWKEFNKVWCYFNI KGEMQTGWQYIDYRWYYLYPDGSMAYNVEIDGRVLNNNGAAR >Mature_762_residues MREFMRHIHFKPIAMILTILFIQFTFNFYLPCKDSYIAYASEVLHKDDIEKYHELSENLIGKSTELMSRENILSNNENNK DGIILKDFNESHIVKECDNTENTESKDEKIVGDSNNTIDKDDNVSEKPDEGNTGGTEQGGNSGNESSGGNNEDVPPEIDN KKQAIVPSINSFAEDMGKNYEKLTVSAANINVQGEYTFIILASDKLNVCKHSATNSTLNKWFIPLIELSKGEQKLSYSTD GKNFFKFSLDSNNKIPYYMRANITGALNYTEKERDSILYFKYSEDNDDTAIKIRIHYIPSVNANDNSNSGNISGDILKSV YIYGTERVGSTLRAKTKYNNNTDKPKVSYQWLRCKDKDGEYKEISGADKEEYKLKSNDKGYYLKVKITVSGEVSESKESD RSEIIKEKLKENSSSSNSGSSSSNNYHSGIVVDTDKTNDDQMYLNTSYSSKVDKEIFDLTKEYEYKKLILEGSNYVWNFN ASDLKNVSQMDDNFDSEIQTKTQTDSEVVINFKHHGVLPGKATIQVNVGDGLNGDNRCLYYYNEGTNSLELISSNVSVKK GKAIFTITHCSKYILSANPNANSNISSGDYNTTIETSTQDNYVNNVVDSDKTFNDPNLNNTDSSSLKWRESMDGKWYLCS NSFIMTGWQKVDNNWYYFNEFGVMQKDWVNSNGKWYYLDNNGCMITGWIKSNNNWYYTNSSGEISTGWKEFNKVWCYFNI KGEMQTGWQYIDYRWYYLYPDGSMAYNVEIDGRVLNNNGAAR
Specific function: Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella and sporulation. Autolysin strictly depends on the presence of choline-containing
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 6 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002502 - InterPro: IPR018337 [H]
Pfam domain/function: PF01510 Amidase_2; PF01473 CW_binding_1 [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 86892; Mature: 86892
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREFMRHIHFKPIAMILTILFIQFTFNFYLPCKDSYIAYASEVLHKDDIEKYHELSENLI CHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GKSTELMSRENILSNNENNKDGIILKDFNESHIVKECDNTENTESKDEKIVGDSNNTIDK CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCC DDNVSEKPDEGNTGGTEQGGNSGNESSGGNNEDVPPEIDNKKQAIVPSINSFAEDMGKNY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCC EKLTVSAANINVQGEYTFIILASDKLNVCKHSATNSTLNKWFIPLIELSKGEQKLSYSTD EEEEEEEEEEEEECEEEEEEEECCCCCHHHCCCCCCCHHHHEEEEEEECCCCCEEEECCC GKNFFKFSLDSNNKIPYYMRANITGALNYTEKERDSILYFKYSEDNDDTAIKIRIHYIPS CCEEEEEEECCCCCCCEEEEECEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEEEEECC VNANDNSNSGNISGDILKSVYIYGTERVGSTLRAKTKYNNNTDKPKVSYQWLRCKDKDGE CCCCCCCCCCCCCHHEEEEEEEEECHHHCCEEEEEECCCCCCCCCEEEEEEEEEECCCCC YKEISGADKEEYKLKSNDKGYYLKVKITVSGEVSESKESDRSEIIKEKLKENSSSSNSGS EEECCCCCHHHEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCC SSSNNYHSGIVVDTDKTNDDQMYLNTSYSSKVDKEIFDLTKEYEYKKLILEGSNYVWNFN CCCCCCCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCEEEECC ASDLKNVSQMDDNFDSEIQTKTQTDSEVVINFKHHGVLPGKATIQVNVGDGLNGDNRCLY HHHHHHHHHHCCCCCCCEEECCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEE YYNEGTNSLELISSNVSVKKGKAIFTITHCSKYILSANPNANSNISSGDYNTTIETSTQD EECCCCCEEEEEECCCEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEECCCCC NYVNNVVDSDKTFNDPNLNNTDSSSLKWRESMDGKWYLCSNSFIMTGWQKVDNNWYYFNE CHHHHHCCCCCCCCCCCCCCCCCCCEEHHHCCCCCEEEEECCEEEECEEEECCCEEEEEC FGVMQKDWVNSNGKWYYLDNNGCMITGWIKSNNNWYYTNSSGEISTGWKEFNKVWCYFNI CCCEEHHEECCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCCCCCHHCCCEEEEEEEE KGEMQTGWQYIDYRWYYLYPDGSMAYNVEIDGRVLNNNGAAR ECCCCCCEEEEEEEEEEEEECCCEEEEEEECCEEECCCCCCC >Mature Secondary Structure MREFMRHIHFKPIAMILTILFIQFTFNFYLPCKDSYIAYASEVLHKDDIEKYHELSENLI CHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GKSTELMSRENILSNNENNKDGIILKDFNESHIVKECDNTENTESKDEKIVGDSNNTIDK CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCC DDNVSEKPDEGNTGGTEQGGNSGNESSGGNNEDVPPEIDNKKQAIVPSINSFAEDMGKNY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCC EKLTVSAANINVQGEYTFIILASDKLNVCKHSATNSTLNKWFIPLIELSKGEQKLSYSTD EEEEEEEEEEEEECEEEEEEEECCCCCHHHCCCCCCCHHHHEEEEEEECCCCCEEEECCC GKNFFKFSLDSNNKIPYYMRANITGALNYTEKERDSILYFKYSEDNDDTAIKIRIHYIPS CCEEEEEEECCCCCCCEEEEECEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEEEEECC VNANDNSNSGNISGDILKSVYIYGTERVGSTLRAKTKYNNNTDKPKVSYQWLRCKDKDGE CCCCCCCCCCCCCHHEEEEEEEEECHHHCCEEEEEECCCCCCCCCEEEEEEEEEECCCCC YKEISGADKEEYKLKSNDKGYYLKVKITVSGEVSESKESDRSEIIKEKLKENSSSSNSGS EEECCCCCHHHEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCC SSSNNYHSGIVVDTDKTNDDQMYLNTSYSSKVDKEIFDLTKEYEYKKLILEGSNYVWNFN CCCCCCCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCEEEECC ASDLKNVSQMDDNFDSEIQTKTQTDSEVVINFKHHGVLPGKATIQVNVGDGLNGDNRCLY HHHHHHHHHHCCCCCCCEEECCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEE YYNEGTNSLELISSNVSVKKGKAIFTITHCSKYILSANPNANSNISSGDYNTTIETSTQD EECCCCCEEEEEECCCEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEECCCCC NYVNNVVDSDKTFNDPNLNNTDSSSLKWRESMDGKWYLCSNSFIMTGWQKVDNNWYYFNE CHHHHHCCCCCCCCCCCCCCCCCCCEEHHHCCCCCEEEEECCEEEECEEEECCCEEEEEC FGVMQKDWVNSNGKWYYLDNNGCMITGWIKSNNNWYYTNSSGEISTGWKEFNKVWCYFNI CCCEEHHEECCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCCCCCHHCCCEEEEEEEE KGEMQTGWQYIDYRWYYLYPDGSMAYNVEIDGRVLNNNGAAR ECCCCCCEEEEEEEEEEEEECCCEEEEEEECCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2875013; 11463916 [H]