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The map label for this gene is ybcS [C]

Identifier: 187933444

GI number: 187933444

Start: 2821357

End: 2822148

Strand: Reverse

Name: ybcS [C]

Synonym: CLL_A2709

Alternate gene names: 187933444

Gene position: 2822148-2821357 (Counterclockwise)

Preceding gene: 187934356

Following gene: 187932504

Centisome position: 74.26

GC content: 31.19

Gene sequence:

>792_bases
ATGTCACAATGGAAATGGTGTGTAGAAAACCAAGATGGAACTATTACTAAAGGTTGGTATGAAGACAATGGGAAGTGGTA
CTACCTAAAGGATAATGGAACTATGGGAACTGGTTGGATTGAGGATAAAGATAGTCATTGGTATTACTTAGATGAAAGTG
GAGCTATGAAAACTGGATGGTTAAAAGATAAGGACAAATGGTATTATTTAAATCCTGTAAGTAATGGATATAAAGGCGAA
ATGTTTGGTAACTGTACTAAAATAATTGATGGTAAAGAATATAGTTTTAATGATTCTGGTGCATGGGTAGAGGATAGTCT
AGTAAGTTCTAAGTGCATAGATTTTATTAAGTCTTGGGAAGGTTTTATAAAAGAAGGAAAAAAATATTATGATTGTGTTG
GCGTTTTAACACAAGGTTACGGATTAACAGGAGATGAAATAAAAAATCTTCCAGAACAAATTTCTGAACCTGAAGCAGCT
GCATTATTAAAAAAAGTTGTTAATAATAAATATGCTAAGGTTATAAAAGATGATTTAGATTCTAAAAAAATAACTTTAAA
GCAACATGAGTTTGATGCATTAGTAAGTTTTGCATATAATTGTGGGACAGTAGGTCTTTTAGGTTCAACATTATATAGAA
ATGTATGTAGTGGAATAAGAGATAAAGATACTATTAATTCTAACTTTCAAGCTTGGTCTAATGGGGGCGGTAAAAGAATA
GAAGGACTCTATAGGCGTAGAACCAAAGAAGCAGATATGTTTTTAAATGCAGATTATACAGGTAATTTATAA

Upstream 100 bases:

>100_bases
TAGCTTTTTATTTTAGTAAAGATAGAAAAGAAATTAAAGAGTAATTTAGGTAGCAGTTTTAGCTACCTTTTTTCTTTATA
TTAATAAGGAGGAATGTAAA

Downstream 100 bases:

>100_bases
AAATAGGGAATATAAAAATAGATTAATTCATATATTTATTGTATATAAATTTCATTTGTCATGTAGTGAACTTTATAATG
TATCCTGAACAATAAAAAAG

Product: cell wall binding repeat domain protein

Products: Hydrolysed Peptidoglycan; Chitodextrin [C]

Alternate protein names: Phage Related Lysozyme; Lysozyme; Surface Protein PspA; Phage Lysozyme; Pneumococcal Surface Protein A; Collagenolytic Protease; Phage-Related Lysozyme; Cell Wall Hydrolase/Autolysin; Integrin-Like Repeat-Containing Lysozyme; Glycoside Hydrolase Family Protein; SCP-Like Extracellular; Endo-Beta-N-Acetylglucosaminidase; Surface Protective Antigen SpaB; Protective Antigen SpaA-Like Protein; Glycoside Hydrolase Family 3 Protein; Glycoside Hydrolase Family; Surface Protein A; Glycosyl Hydrolase Family; Cell Wall Surface Anchor Protein; SH3 Type 3 Domain-Containing Protein; Glycoside Hydrolase

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSQWKWCVENQDGTITKGWYEDNGKWYYLKDNGTMGTGWIEDKDSHWYYLDESGAMKTGWLKDKDKWYYLNPVSNGYKGE
MFGNCTKIIDGKEYSFNDSGAWVEDSLVSSKCIDFIKSWEGFIKEGKKYYDCVGVLTQGYGLTGDEIKNLPEQISEPEAA
ALLKKVVNNKYAKVIKDDLDSKKITLKQHEFDALVSFAYNCGTVGLLGSTLYRNVCSGIRDKDTINSNFQAWSNGGGKRI
EGLYRRRTKEADMFLNADYTGNL

Sequences:

>Translated_263_residues
MSQWKWCVENQDGTITKGWYEDNGKWYYLKDNGTMGTGWIEDKDSHWYYLDESGAMKTGWLKDKDKWYYLNPVSNGYKGE
MFGNCTKIIDGKEYSFNDSGAWVEDSLVSSKCIDFIKSWEGFIKEGKKYYDCVGVLTQGYGLTGDEIKNLPEQISEPEAA
ALLKKVVNNKYAKVIKDDLDSKKITLKQHEFDALVSFAYNCGTVGLLGSTLYRNVCSGIRDKDTINSNFQAWSNGGGKRI
EGLYRRRTKEADMFLNADYTGNL
>Mature_262_residues
SQWKWCVENQDGTITKGWYEDNGKWYYLKDNGTMGTGWIEDKDSHWYYLDESGAMKTGWLKDKDKWYYLNPVSNGYKGEM
FGNCTKIIDGKEYSFNDSGAWVEDSLVSSKCIDFIKSWEGFIKEGKKYYDCVGVLTQGYGLTGDEIKNLPEQISEPEAAA
LLKKVVNNKYAKVIKDDLDSKKITLKQHEFDALVSFAYNCGTVGLLGSTLYRNVCSGIRDKDTINSNFQAWSNGGGKRIE
GLYRRRTKEADMFLNADYTGNL

Specific function: Essential For Lysis Of Bacterial Cell Wall, By Showing Cell Wall Hydrolyzing Activity (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.2.1.17 [C]

Molecular weight: Translated: 30018; Mature: 29887

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQWKWCVENQDGTITKGWYEDNGKWYYLKDNGTMGTGWIEDKDSHWYYLDESGAMKTGW
CCCCCEEEECCCCCEEECEECCCCEEEEEECCCCCCCCEECCCCCEEEEECCCCCEEECC
LKDKDKWYYLNPVSNGYKGEMFGNCTKIIDGKEYSFNDSGAWVEDSLVSSKCIDFIKSWE
CCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
GFIKEGKKYYDCVGVLTQGYGLTGDEIKNLPEQISEPEAAALLKKVVNNKYAKVIKDDLD
HHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
SKKITLKQHEFDALVSFAYNCGTVGLLGSTLYRNVCSGIRDKDTINSNFQAWSNGGGKRI
CCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHH
EGLYRRRTKEADMFLNADYTGNL
HHHHHHHCCCCCEEEECCCCCCC
>Mature Secondary Structure 
SQWKWCVENQDGTITKGWYEDNGKWYYLKDNGTMGTGWIEDKDSHWYYLDESGAMKTGW
CCCCEEEECCCCCEEECEECCCCEEEEEECCCCCCCCEECCCCCEEEEECCCCCEEECC
LKDKDKWYYLNPVSNGYKGEMFGNCTKIIDGKEYSFNDSGAWVEDSLVSSKCIDFIKSWE
CCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
GFIKEGKKYYDCVGVLTQGYGLTGDEIKNLPEQISEPEAAALLKKVVNNKYAKVIKDDLD
HHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
SKKITLKQHEFDALVSFAYNCGTVGLLGSTLYRNVCSGIRDKDTINSNFQAWSNGGGKRI
CCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHH
EGLYRRRTKEADMFLNADYTGNL
HHHHHHHCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Peptidoglycan (N-acetylmuraminic acid and N-acetyl-D-glucosamine Residues); Chitodextrin (N-acetyl-D-glucosamine residues) [C]

Specific reaction: Hydrolysis of beta-linkage between N-acetylmuraminic acid and N-acetyl- D-glucosamine residues in peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrin [C]

General reaction: O-Glycosyl bond hydrolysis; glycosyltransfer to saccharides other alcohols and H2O [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA